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  1. EigenStratDatabaseToolsEigenStratDatabaseToolsPublic

    A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.

    Python 6

  2. Sex.DetERRmineSex.DetERRminePublic

    A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.

    Python 16 7

  3. RAStoolsRAStoolsPublic

    A set of tools to calculate Rare Allele Sharing statistics.

    Python 5 1

  4. BareBonesBashBareBonesBashPublic

    A basic Bash tutorial by @jfy133, @aidaanva and @TCLamnidis.

    HTML 2

  5. AdmixturePlotterAdmixturePlotterPublic

    An R script to generate plots for ADMIXTURE runs, for multiple K values.

    R 19 3

  6. ContaminateGenotypesContaminateGenotypesPublic

    A simple python script to contaminate Eigenstrat genotypes.

    Python 2 1