V1 private api by BrianMichell · Pull Request #557 · TGSAI/mdio-python

-Original file line number
+Diff line change
@@ Expand Up / @@ -153,3 +153,6 @@ mdio1/* @@
 pytest-of-*
 tmp
 debugging/*
+# Docs
+docs/tutorials/output/*

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Sign in to your account Closed BrianMichell wants to merge 55 commits into TGSAI:v1 from BrianMichell:v1_private_api Conversation 2 Commits 55 Checks 0 Files changed Uh oh! There was an error while loading. Please reload this page. Closed V1 private api #557 Show file tree Hide file tree Changes from all commits Commits Show all changes 55 commits Select commit Hold shift + click to select a range f5144d0 update project metadata and deps tasansal Apr 29, 20254142ae3 Begin adding template factory BrianMichell Apr 28, 2025d2284f2 Resolve deprecated warning BrianMichell Apr 28, 20253064117 Update type hinting, default compressor to none. BrianMichell Apr 28, 2025a733bdd Testing updates BrianMichell Apr 28, 2025abc41f2 Begin work on schema construction with Xarray BrianMichell May 1, 2025b4cfd36 Add documentation BrianMichell May 2, 2025764f902 Fix serialization issues BrianMichell May 2, 2025e757823 Begin implementing a builder pattern for Datasets BrianMichell May 2, 20250ea7d1b Fix zfp in test BrianMichell May 5, 20258ead67b Begin cleanup and removal of direct xarray references BrianMichell May 5, 202535895d5 Use temp path BrianMichell May 5, 2025cf1ea01 Rename source files BrianMichell May 5, 20259386eb8 Update overloads BrianMichell May 5, 2025df3d148 Linting BrianMichell May 6, 20250fdd4a8 Linting BrianMichell May 6, 2025de8d541 Pull construction logic out of schemas directory BrianMichell May 6, 20253707279 Linting BrianMichell May 6, 2025cec107d Refactor BrianMichell May 6, 2025a67ccc2 Rename test BrianMichell May 6, 2025f58e63a Rename builder class BrianMichell May 6, 2025e53ffa9 Begin canonical dataset factory creation. BrianMichell May 6, 2025a06f8b0 Linting and cleanup BrianMichell May 7, 2025b856f58 Fix factory default dtype BrianMichell May 7, 20252787978 Fix for renamed directory BrianMichell May 7, 2025a70f63c Linting auto-fixes BrianMichell May 7, 20253c9f0ec Linting BrianMichell May 7, 2025433d908 Fix todo linting error BrianMichell May 27, 2025046a73c Fix test schema from snake to camel case BrianMichell May 27, 20258fa4b68 Add JSON serialization test BrianMichell May 27, 202526d2db5 Ensure zarr v2 kwarg present and correct BrianMichell May 27, 202517e4029 Fix iterator BrianMichell May 27, 2025d83abbd Resolve serialization issues to/from JSON BrianMichell May 27, 2025afbd5fa Remove vestigial testing source file BrianMichell May 28, 20252845d13 Cleanup BrianMichell May 28, 2025617a690 Cleanup BrianMichell May 28, 2025308d79e Relock deps BrianMichell May 28, 20257b03da4 Cleanup pyproject toml BrianMichell May 28, 202531c294b Fix missing import BrianMichell May 28, 2025aa5cf85 Remove excess function import from init BrianMichell May 28, 2025aba7637 Linting BrianMichell May 28, 2025ea82767 Fix output not being written to temp path BrianMichell May 28, 20253b49dc8 Expand testcases BrianMichell May 29, 2025f064ec6 Adds json dump overload BrianMichell May 30, 2025cfe234c Fix metadata serialization BrianMichell May 30, 20258a460ba Add convenience to_mdio function to write metadata BrianMichell May 30, 202570feb35 Update tests BrianMichell May 30, 2025fe2c84b Begin documentation BrianMichell May 30, 2025df8de57 Remove accidental local change BrianMichell May 30, 2025b7f607c Add contract factory creation method BrianMichell May 30, 2025de2b735 Linting BrianMichell May 30, 202585a2adb Fix tests until proposed PR is merged BrianMichell May 30, 202587e4a82 Fix deprecated zarr_version kwarg BrianMichell May 30, 2025b39f8c6 Linting BrianMichell May 30, 2025006f614 Fix example run BrianMichell Jun 2, 2025 File filter Filter by extension Filter by extension .ipynb (1) .lock (1) .md (1) .py (13) .toml (1) dotfile (1) All 6 file types selected Only manifest files Deleted files Viewed files Clear filters Conversations Failed to load comments. 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Diff view Unified Split Hide whitespace Diff view Unified Split Hide whitespace .gitignore .gitignore docs/tutorials/builder.ipynb builder.ipynb docs/tutorials/builder.md builder.md noxfile.py noxfile.py pyproject.toml pyproject.toml src/mdio/core/v1/__init__.py __init__.py src/mdio/core/v1/_overloads.py _overloads.py src/mdio/core/v1/_serializer.py _serializer.py src/mdio/core/v1/builder.py builder.py src/mdio/core/v1/factory.py factory.py src/mdio/schemas/builder.py builder.py src/mdio/schemas/core.py core.py src/mdio/schemas/v1/units.py units.py tests/integration/test_v1_serialization.py test_v1_serialization.py tests/unit/schema/v1/test_template_builder.py test_template_builder.py tests/unit/test_schema.py test_schema.py tests/unit/test_template_factory.py test_template_factory.py uv.lock uv.lock There are no files selected for viewing 3 changes: 3 additions & 0 deletions 3 .gitignore Show comments View file Open in desktop Original file line number Diff line number Diff line change Expand Up @@ -153,3 +153,6 @@ mdio1/* pytest-of-* tmp debugging/* # Docs docs/tutorials/output/* Loading Oops, something went wrong. 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Sign in to your account Closed BrianMichell wants to merge 55 commits into TGSAI:v1 from BrianMichell:v1_private_api Conversation 2 Commits 55 Checks 0 Files changed Uh oh! There was an error while loading. Please reload this page. Closed V1 private api #557 Show file tree Hide file tree Changes from all commits Commits Show all changes 55 commits Select commit Hold shift + click to select a range f5144d0 update project metadata and deps tasansal Apr 29, 20254142ae3 Begin adding template factory BrianMichell Apr 28, 2025d2284f2 Resolve deprecated warning BrianMichell Apr 28, 20253064117 Update type hinting, default compressor to none. BrianMichell Apr 28, 2025a733bdd Testing updates BrianMichell Apr 28, 2025abc41f2 Begin work on schema construction with Xarray BrianMichell May 1, 2025b4cfd36 Add documentation BrianMichell May 2, 2025764f902 Fix serialization issues BrianMichell May 2, 2025e757823 Begin implementing a builder pattern for Datasets BrianMichell May 2, 20250ea7d1b Fix zfp in test BrianMichell May 5, 20258ead67b Begin cleanup and removal of direct xarray references BrianMichell May 5, 202535895d5 Use temp path BrianMichell May 5, 2025cf1ea01 Rename source files BrianMichell May 5, 20259386eb8 Update overloads BrianMichell May 5, 2025df3d148 Linting BrianMichell May 6, 20250fdd4a8 Linting BrianMichell May 6, 2025de8d541 Pull construction logic out of schemas directory BrianMichell May 6, 20253707279 Linting BrianMichell May 6, 2025cec107d Refactor BrianMichell May 6, 2025a67ccc2 Rename test BrianMichell May 6, 2025f58e63a Rename builder class BrianMichell May 6, 2025e53ffa9 Begin canonical dataset factory creation. BrianMichell May 6, 2025a06f8b0 Linting and cleanup BrianMichell May 7, 2025b856f58 Fix factory default dtype BrianMichell May 7, 20252787978 Fix for renamed directory BrianMichell May 7, 2025a70f63c Linting auto-fixes BrianMichell May 7, 20253c9f0ec Linting BrianMichell May 7, 2025433d908 Fix todo linting error BrianMichell May 27, 2025046a73c Fix test schema from snake to camel case BrianMichell May 27, 20258fa4b68 Add JSON serialization test BrianMichell May 27, 202526d2db5 Ensure zarr v2 kwarg present and correct BrianMichell May 27, 202517e4029 Fix iterator BrianMichell May 27, 2025d83abbd Resolve serialization issues to/from JSON BrianMichell May 27, 2025afbd5fa Remove vestigial testing source file BrianMichell May 28, 20252845d13 Cleanup BrianMichell May 28, 2025617a690 Cleanup BrianMichell May 28, 2025308d79e Relock deps BrianMichell May 28, 20257b03da4 Cleanup pyproject toml BrianMichell May 28, 202531c294b Fix missing import BrianMichell May 28, 2025aa5cf85 Remove excess function import from init BrianMichell May 28, 2025aba7637 Linting BrianMichell May 28, 2025ea82767 Fix output not being written to temp path BrianMichell May 28, 20253b49dc8 Expand testcases BrianMichell May 29, 2025f064ec6 Adds json dump overload BrianMichell May 30, 2025cfe234c Fix metadata serialization BrianMichell May 30, 20258a460ba Add convenience to_mdio function to write metadata BrianMichell May 30, 202570feb35 Update tests BrianMichell May 30, 2025fe2c84b Begin documentation BrianMichell May 30, 2025df8de57 Remove accidental local change BrianMichell May 30, 2025b7f607c Add contract factory creation method BrianMichell May 30, 2025de2b735 Linting BrianMichell May 30, 202585a2adb Fix tests until proposed PR is merged BrianMichell May 30, 202587e4a82 Fix deprecated zarr_version kwarg BrianMichell May 30, 2025b39f8c6 Linting BrianMichell May 30, 2025006f614 Fix example run BrianMichell Jun 2, 2025 File filter Filter by extension Filter by extension .ipynb (1) .lock (1) .md (1) .py (13) .toml (1) dotfile (1) All 6 file types selected Only manifest files Deleted files Viewed files Clear filters Conversations Failed to load comments. 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Diff view Unified Split Hide whitespace Diff view Unified Split Hide whitespace .gitignore .gitignore docs/tutorials/builder.ipynb builder.ipynb docs/tutorials/builder.md builder.md noxfile.py noxfile.py pyproject.toml pyproject.toml src/mdio/core/v1/__init__.py __init__.py src/mdio/core/v1/_overloads.py _overloads.py src/mdio/core/v1/_serializer.py _serializer.py src/mdio/core/v1/builder.py builder.py src/mdio/core/v1/factory.py factory.py src/mdio/schemas/builder.py builder.py src/mdio/schemas/core.py core.py src/mdio/schemas/v1/units.py units.py tests/integration/test_v1_serialization.py test_v1_serialization.py tests/unit/schema/v1/test_template_builder.py test_template_builder.py tests/unit/test_schema.py test_schema.py tests/unit/test_template_factory.py test_template_factory.py uv.lock uv.lock There are no files selected for viewing 3 changes: 3 additions & 0 deletions 3 .gitignore Show comments View file Open in desktop Original file line number Diff line number Diff line change Expand Up @@ -153,3 +153,6 @@ mdio1/* pytest-of-* tmp debugging/* # Docs docs/tutorials/output/* Loading Oops, something went wrong. 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Footer navigation Terms Privacy Security Status Community Docs Contact You can’t perform that action at this time. , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Skip to contentNavigation Menu Sign inAppearance settings AI CODE CREATIONGitHub CopilotWrite better code with AI GitHub Copilot appDirect agents from issue to merge MCP RegistryIntegrate external tools DEVELOPER WORKFLOWSActionsAutomate any workflow CodespacesInstant dev environments IssuesPlan and track work Code ReviewManage code changes Code QualityEnforce quality at merge APPLICATION SECURITYGitHub Advanced SecurityFind and fix vulnerabilities Code securitySecure your code as you build Secret protectionStop leaks before they start EXPLOREWhy GitHub Documentation Blog Changelog Marketplace View all features BY COMPANY SIZEEnterprises Small and medium teams Startups Nonprofits BY USE CASEApp Modernization DevSecOps DevOps CI/CD View all use cases BY INDUSTRYHealthcare Financial services Manufacturing Government View all industries View all solutions EXPLORE BY TOPICAI Software Development DevOps Security View all topics EXPLORE BY TYPECustomer stories Events & webinars Ebooks & reports Business insights GitHub Skills SUPPORT & SERVICESDocumentation Customer support Community forum Trust center Partners View all resources COMMUNITYGitHub SponsorsFund open source developers PROGRAMSSecurity Lab Maintainer Community GitHub Stars Archive Program REPOSITORIESTopics Trending Collections ENTERPRISE SOLUTIONSEnterprise platformAI-powered developer platform AVAILABLE ADD-ONSGitHub Advanced SecurityEnterprise-grade security features Copilot for BusinessEnterprise-grade AI features Premium SupportEnterprise-grade 24/7 support Pricing Sign in Sign upAppearance settings You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert Uh oh! There was an error while loading. Please reload this page. TGSAI /mdio-pythonPublic Notifications You must be signed in to change notification settings Fork 19 Star 42 Code Issues23 Pull requests26 Actions Projects Security and quality0 Insights Additional navigation options Code Issues Pull requests Actions Projects Security and quality Insights V1 private api#557 New issue Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Sign up for GitHub By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails. Already on GitHub? Sign in to your account Closed BrianMichell wants to merge 55 commits into TGSAI:v1 from BrianMichell:v1_private_api Conversation 2 Commits 55 Checks 0 Files changed Uh oh! There was an error while loading. Please reload this page. Closed V1 private api #557 Show file tree Hide file tree Changes from all commits Commits Show all changes 55 commits Select commit Hold shift + click to select a range f5144d0 update project metadata and deps tasansal Apr 29, 20254142ae3 Begin adding template factory BrianMichell Apr 28, 2025d2284f2 Resolve deprecated warning BrianMichell Apr 28, 20253064117 Update type hinting, default compressor to none. BrianMichell Apr 28, 2025a733bdd Testing updates BrianMichell Apr 28, 2025abc41f2 Begin work on schema construction with Xarray BrianMichell May 1, 2025b4cfd36 Add documentation BrianMichell May 2, 2025764f902 Fix serialization issues BrianMichell May 2, 2025e757823 Begin implementing a builder pattern for Datasets BrianMichell May 2, 20250ea7d1b Fix zfp in test BrianMichell May 5, 20258ead67b Begin cleanup and removal of direct xarray references BrianMichell May 5, 202535895d5 Use temp path BrianMichell May 5, 2025cf1ea01 Rename source files BrianMichell May 5, 20259386eb8 Update overloads BrianMichell May 5, 2025df3d148 Linting BrianMichell May 6, 20250fdd4a8 Linting BrianMichell May 6, 2025de8d541 Pull construction logic out of schemas directory BrianMichell May 6, 20253707279 Linting BrianMichell May 6, 2025cec107d Refactor BrianMichell May 6, 2025a67ccc2 Rename test BrianMichell May 6, 2025f58e63a Rename builder class BrianMichell May 6, 2025e53ffa9 Begin canonical dataset factory creation. BrianMichell May 6, 2025a06f8b0 Linting and cleanup BrianMichell May 7, 2025b856f58 Fix factory default dtype BrianMichell May 7, 20252787978 Fix for renamed directory BrianMichell May 7, 2025a70f63c Linting auto-fixes BrianMichell May 7, 20253c9f0ec Linting BrianMichell May 7, 2025433d908 Fix todo linting error BrianMichell May 27, 2025046a73c Fix test schema from snake to camel case BrianMichell May 27, 20258fa4b68 Add JSON serialization test BrianMichell May 27, 202526d2db5 Ensure zarr v2 kwarg present and correct BrianMichell May 27, 202517e4029 Fix iterator BrianMichell May 27, 2025d83abbd Resolve serialization issues to/from JSON BrianMichell May 27, 2025afbd5fa Remove vestigial testing source file BrianMichell May 28, 20252845d13 Cleanup BrianMichell May 28, 2025617a690 Cleanup BrianMichell May 28, 2025308d79e Relock deps BrianMichell May 28, 20257b03da4 Cleanup pyproject toml BrianMichell May 28, 202531c294b Fix missing import BrianMichell May 28, 2025aa5cf85 Remove excess function import from init BrianMichell May 28, 2025aba7637 Linting BrianMichell May 28, 2025ea82767 Fix output not being written to temp path BrianMichell May 28, 20253b49dc8 Expand testcases BrianMichell May 29, 2025f064ec6 Adds json dump overload BrianMichell May 30, 2025cfe234c Fix metadata serialization BrianMichell May 30, 20258a460ba Add convenience to_mdio function to write metadata BrianMichell May 30, 202570feb35 Update tests BrianMichell May 30, 2025fe2c84b Begin documentation BrianMichell May 30, 2025df8de57 Remove accidental local change BrianMichell May 30, 2025b7f607c Add contract factory creation method BrianMichell May 30, 2025de2b735 Linting BrianMichell May 30, 202585a2adb Fix tests until proposed PR is merged BrianMichell May 30, 202587e4a82 Fix deprecated zarr_version kwarg BrianMichell May 30, 2025b39f8c6 Linting BrianMichell May 30, 2025006f614 Fix example run BrianMichell Jun 2, 2025 File filter Filter by extension Filter by extension .ipynb (1) .lock (1) .md (1) .py (13) .toml (1) dotfile (1) All 6 file types selected Only manifest files Deleted files Viewed files Clear filters Conversations Failed to load comments. 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Diff view Unified Split Hide whitespace Diff view Unified Split Hide whitespace .gitignore .gitignore docs/tutorials/builder.ipynb builder.ipynb docs/tutorials/builder.md builder.md noxfile.py noxfile.py pyproject.toml pyproject.toml src/mdio/core/v1/__init__.py __init__.py src/mdio/core/v1/_overloads.py _overloads.py src/mdio/core/v1/_serializer.py _serializer.py src/mdio/core/v1/builder.py builder.py src/mdio/core/v1/factory.py factory.py src/mdio/schemas/builder.py builder.py src/mdio/schemas/core.py core.py src/mdio/schemas/v1/units.py units.py tests/integration/test_v1_serialization.py test_v1_serialization.py tests/unit/schema/v1/test_template_builder.py test_template_builder.py tests/unit/test_schema.py test_schema.py tests/unit/test_template_factory.py test_template_factory.py uv.lock uv.lock There are no files selected for viewing 3 changes: 3 additions & 0 deletions 3 .gitignore Show comments View file Open in desktop Original file line number Diff line number Diff line change Expand Up @@ -153,3 +153,6 @@ mdio1/* pytest-of-* tmp debugging/* # Docs docs/tutorials/output/* Loading Oops, something went wrong. Uh oh! There was an error while loading. Please reload this page. Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later. Footer © 2026 GitHub, Inc. Footer navigation Terms Privacy Security Status Community Docs Contact You can’t perform that action at this time. , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' Skip to contentNavigation Menu Sign inAppearance settings AI CODE CREATIONGitHub CopilotWrite better code with AI GitHub Copilot appDirect agents from issue to merge MCP RegistryIntegrate external tools DEVELOPER WORKFLOWSActionsAutomate any workflow CodespacesInstant dev environments IssuesPlan and track work Code ReviewManage code changes Code QualityEnforce quality at merge APPLICATION SECURITYGitHub Advanced SecurityFind and fix vulnerabilities Code securitySecure your code as you build Secret protectionStop leaks before they start EXPLOREWhy GitHub Documentation Blog Changelog Marketplace View all features BY COMPANY SIZEEnterprises Small and medium teams Startups Nonprofits BY USE CASEApp Modernization DevSecOps DevOps CI/CD View all use cases BY INDUSTRYHealthcare Financial services Manufacturing Government View all industries View all solutions EXPLORE BY TOPICAI Software Development DevOps Security View all topics EXPLORE BY TYPECustomer stories Events & webinars Ebooks & reports Business insights GitHub Skills SUPPORT & SERVICESDocumentation Customer support Community forum Trust center Partners View all resources COMMUNITYGitHub SponsorsFund open source developers PROGRAMSSecurity Lab Maintainer Community GitHub Stars Archive Program REPOSITORIESTopics Trending Collections ENTERPRISE SOLUTIONSEnterprise platformAI-powered developer platform AVAILABLE ADD-ONSGitHub Advanced SecurityEnterprise-grade security features Copilot for BusinessEnterprise-grade AI features Premium SupportEnterprise-grade 24/7 support Pricing Sign in Sign upAppearance settings You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert Uh oh! There was an error while loading. Please reload this page. TGSAI /mdio-pythonPublic Notifications You must be signed in to change notification settings Fork 19 Star 42 Code Issues23 Pull requests26 Actions Projects Security and quality0 Insights Additional navigation options Code Issues Pull requests Actions Projects Security and quality Insights V1 private api#557 New issue Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Sign up for GitHub By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails. Already on GitHub? Sign in to your account Closed BrianMichell wants to merge 55 commits into TGSAI:v1 from BrianMichell:v1_private_api Conversation 2 Commits 55 Checks 0 Files changed Uh oh! There was an error while loading. Please reload this page. Closed V1 private api #557 Show file tree Hide file tree Changes from all commits Commits Show all changes 55 commits Select commit Hold shift + click to select a range f5144d0 update project metadata and deps tasansal Apr 29, 20254142ae3 Begin adding template factory BrianMichell Apr 28, 2025d2284f2 Resolve deprecated warning BrianMichell Apr 28, 20253064117 Update type hinting, default compressor to none. BrianMichell Apr 28, 2025a733bdd Testing updates BrianMichell Apr 28, 2025abc41f2 Begin work on schema construction with Xarray BrianMichell May 1, 2025b4cfd36 Add documentation BrianMichell May 2, 2025764f902 Fix serialization issues BrianMichell May 2, 2025e757823 Begin implementing a builder pattern for Datasets BrianMichell May 2, 20250ea7d1b Fix zfp in test BrianMichell May 5, 20258ead67b Begin cleanup and removal of direct xarray references BrianMichell May 5, 202535895d5 Use temp path BrianMichell May 5, 2025cf1ea01 Rename source files BrianMichell May 5, 20259386eb8 Update overloads BrianMichell May 5, 2025df3d148 Linting BrianMichell May 6, 20250fdd4a8 Linting BrianMichell May 6, 2025de8d541 Pull construction logic out of schemas directory BrianMichell May 6, 20253707279 Linting BrianMichell May 6, 2025cec107d Refactor BrianMichell May 6, 2025a67ccc2 Rename test BrianMichell May 6, 2025f58e63a Rename builder class BrianMichell May 6, 2025e53ffa9 Begin canonical dataset factory creation. BrianMichell May 6, 2025a06f8b0 Linting and cleanup BrianMichell May 7, 2025b856f58 Fix factory default dtype BrianMichell May 7, 20252787978 Fix for renamed directory BrianMichell May 7, 2025a70f63c Linting auto-fixes BrianMichell May 7, 20253c9f0ec Linting BrianMichell May 7, 2025433d908 Fix todo linting error BrianMichell May 27, 2025046a73c Fix test schema from snake to camel case BrianMichell May 27, 20258fa4b68 Add JSON serialization test BrianMichell May 27, 202526d2db5 Ensure zarr v2 kwarg present and correct BrianMichell May 27, 202517e4029 Fix iterator BrianMichell May 27, 2025d83abbd Resolve serialization issues to/from JSON BrianMichell May 27, 2025afbd5fa Remove vestigial testing source file BrianMichell May 28, 20252845d13 Cleanup BrianMichell May 28, 2025617a690 Cleanup BrianMichell May 28, 2025308d79e Relock deps BrianMichell May 28, 20257b03da4 Cleanup pyproject toml BrianMichell May 28, 202531c294b Fix missing import BrianMichell May 28, 2025aa5cf85 Remove excess function import from init BrianMichell May 28, 2025aba7637 Linting BrianMichell May 28, 2025ea82767 Fix output not being written to temp path BrianMichell May 28, 20253b49dc8 Expand testcases BrianMichell May 29, 2025f064ec6 Adds json dump overload BrianMichell May 30, 2025cfe234c Fix metadata serialization BrianMichell May 30, 20258a460ba Add convenience to_mdio function to write metadata BrianMichell May 30, 202570feb35 Update tests BrianMichell May 30, 2025fe2c84b Begin documentation BrianMichell May 30, 2025df8de57 Remove accidental local change BrianMichell May 30, 2025b7f607c Add contract factory creation method BrianMichell May 30, 2025de2b735 Linting BrianMichell May 30, 202585a2adb Fix tests until proposed PR is merged BrianMichell May 30, 202587e4a82 Fix deprecated zarr_version kwarg BrianMichell May 30, 2025b39f8c6 Linting BrianMichell May 30, 2025006f614 Fix example run BrianMichell Jun 2, 2025 File filter Filter by extension Filter by extension .ipynb (1) .lock (1) .md (1) .py (13) .toml (1) dotfile (1) All 6 file types selected Only manifest files Deleted files Viewed files Clear filters Conversations Failed to load comments. 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Diff view Unified Split Hide whitespace Diff view Unified Split Hide whitespace .gitignore .gitignore docs/tutorials/builder.ipynb builder.ipynb docs/tutorials/builder.md builder.md noxfile.py noxfile.py pyproject.toml pyproject.toml src/mdio/core/v1/__init__.py __init__.py src/mdio/core/v1/_overloads.py _overloads.py src/mdio/core/v1/_serializer.py _serializer.py src/mdio/core/v1/builder.py builder.py src/mdio/core/v1/factory.py factory.py src/mdio/schemas/builder.py builder.py src/mdio/schemas/core.py core.py src/mdio/schemas/v1/units.py units.py tests/integration/test_v1_serialization.py test_v1_serialization.py tests/unit/schema/v1/test_template_builder.py test_template_builder.py tests/unit/test_schema.py test_schema.py tests/unit/test_template_factory.py test_template_factory.py uv.lock uv.lock There are no files selected for viewing 3 changes: 3 additions & 0 deletions 3 .gitignore Show comments View file Open in desktop Original file line number Diff line number Diff line change Expand Up @@ -153,3 +153,6 @@ mdio1/* pytest-of-* tmp debugging/* # Docs docs/tutorials/output/* Loading Oops, something went wrong. Uh oh! There was an error while loading. Please reload this page. Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later. Footer © 2026 GitHub, Inc. Footer navigation Terms Privacy Security Status Community Docs Contact You can’t perform that action at this time. , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Skip to contentNavigation Menu Sign inAppearance settings AI CODE CREATIONGitHub CopilotWrite better code with AI GitHub Copilot appDirect agents from issue to merge MCP RegistryIntegrate external tools DEVELOPER WORKFLOWSActionsAutomate any workflow CodespacesInstant dev environments IssuesPlan and track work Code ReviewManage code changes Code QualityEnforce quality at merge APPLICATION SECURITYGitHub Advanced SecurityFind and fix vulnerabilities Code securitySecure your code as you build Secret protectionStop leaks before they start EXPLOREWhy GitHub Documentation Blog Changelog Marketplace View all features BY COMPANY SIZEEnterprises Small and medium teams Startups Nonprofits BY USE CASEApp Modernization DevSecOps DevOps CI/CD View all use cases BY INDUSTRYHealthcare Financial services Manufacturing Government View all industries View all solutions EXPLORE BY TOPICAI Software Development DevOps Security View all topics EXPLORE BY TYPECustomer stories Events & webinars Ebooks & reports Business insights GitHub Skills SUPPORT & SERVICESDocumentation Customer support Community forum Trust center Partners View all resources COMMUNITYGitHub SponsorsFund open source developers PROGRAMSSecurity Lab Maintainer Community GitHub Stars Archive Program REPOSITORIESTopics Trending Collections ENTERPRISE SOLUTIONSEnterprise platformAI-powered developer platform AVAILABLE ADD-ONSGitHub Advanced SecurityEnterprise-grade security features Copilot for BusinessEnterprise-grade AI features Premium SupportEnterprise-grade 24/7 support Pricing Sign in Sign upAppearance settings You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert Uh oh! There was an error while loading. Please reload this page. TGSAI /mdio-pythonPublic Notifications You must be signed in to change notification settings Fork 19 Star 42 Code Issues23 Pull requests26 Actions Projects Security and quality0 Insights Additional navigation options Code Issues Pull requests Actions Projects Security and quality Insights V1 private api#557 New issue Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Sign up for GitHub By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails. Already on GitHub? Sign in to your account Closed BrianMichell wants to merge 55 commits into TGSAI:v1 from BrianMichell:v1_private_api Conversation 2 Commits 55 Checks 0 Files changed Uh oh! There was an error while loading. Please reload this page. Closed V1 private api #557 Show file tree Hide file tree Changes from all commits Commits Show all changes 55 commits Select commit Hold shift + click to select a range f5144d0 update project metadata and deps tasansal Apr 29, 20254142ae3 Begin adding template factory BrianMichell Apr 28, 2025d2284f2 Resolve deprecated warning BrianMichell Apr 28, 20253064117 Update type hinting, default compressor to none. BrianMichell Apr 28, 2025a733bdd Testing updates BrianMichell Apr 28, 2025abc41f2 Begin work on schema construction with Xarray BrianMichell May 1, 2025b4cfd36 Add documentation BrianMichell May 2, 2025764f902 Fix serialization issues BrianMichell May 2, 2025e757823 Begin implementing a builder pattern for Datasets BrianMichell May 2, 20250ea7d1b Fix zfp in test BrianMichell May 5, 20258ead67b Begin cleanup and removal of direct xarray references BrianMichell May 5, 202535895d5 Use temp path BrianMichell May 5, 2025cf1ea01 Rename source files BrianMichell May 5, 20259386eb8 Update overloads BrianMichell May 5, 2025df3d148 Linting BrianMichell May 6, 20250fdd4a8 Linting BrianMichell May 6, 2025de8d541 Pull construction logic out of schemas directory BrianMichell May 6, 20253707279 Linting BrianMichell May 6, 2025cec107d Refactor BrianMichell May 6, 2025a67ccc2 Rename test BrianMichell May 6, 2025f58e63a Rename builder class BrianMichell May 6, 2025e53ffa9 Begin canonical dataset factory creation. BrianMichell May 6, 2025a06f8b0 Linting and cleanup BrianMichell May 7, 2025b856f58 Fix factory default dtype BrianMichell May 7, 20252787978 Fix for renamed directory BrianMichell May 7, 2025a70f63c Linting auto-fixes BrianMichell May 7, 20253c9f0ec Linting BrianMichell May 7, 2025433d908 Fix todo linting error BrianMichell May 27, 2025046a73c Fix test schema from snake to camel case BrianMichell May 27, 20258fa4b68 Add JSON serialization test BrianMichell May 27, 202526d2db5 Ensure zarr v2 kwarg present and correct BrianMichell May 27, 202517e4029 Fix iterator BrianMichell May 27, 2025d83abbd Resolve serialization issues to/from JSON BrianMichell May 27, 2025afbd5fa Remove vestigial testing source file BrianMichell May 28, 20252845d13 Cleanup BrianMichell May 28, 2025617a690 Cleanup BrianMichell May 28, 2025308d79e Relock deps BrianMichell May 28, 20257b03da4 Cleanup pyproject toml BrianMichell May 28, 202531c294b Fix missing import BrianMichell May 28, 2025aa5cf85 Remove excess function import from init BrianMichell May 28, 2025aba7637 Linting BrianMichell May 28, 2025ea82767 Fix output not being written to temp path BrianMichell May 28, 20253b49dc8 Expand testcases BrianMichell May 29, 2025f064ec6 Adds json dump overload BrianMichell May 30, 2025cfe234c Fix metadata serialization BrianMichell May 30, 20258a460ba Add convenience to_mdio function to write metadata BrianMichell May 30, 202570feb35 Update tests BrianMichell May 30, 2025fe2c84b Begin documentation BrianMichell May 30, 2025df8de57 Remove accidental local change BrianMichell May 30, 2025b7f607c Add contract factory creation method BrianMichell May 30, 2025de2b735 Linting BrianMichell May 30, 202585a2adb Fix tests until proposed PR is merged BrianMichell May 30, 202587e4a82 Fix deprecated zarr_version kwarg BrianMichell May 30, 2025b39f8c6 Linting BrianMichell May 30, 2025006f614 Fix example run BrianMichell Jun 2, 2025 File filter Filter by extension Filter by extension .ipynb (1) .lock (1) .md (1) .py (13) .toml (1) dotfile (1) All 6 file types selected Only manifest files Deleted files Viewed files Clear filters Conversations Failed to load comments. Loading Uh oh! There was an error while loading. Please reload this page. Jump to Jump to file Failed to load files. Loading Uh oh! There was an error while loading. Please reload this page. Diff view Unified Split Hide whitespace Diff view Unified Split Hide whitespace .gitignore .gitignore docs/tutorials/builder.ipynb builder.ipynb docs/tutorials/builder.md builder.md noxfile.py noxfile.py pyproject.toml pyproject.toml src/mdio/core/v1/__init__.py __init__.py src/mdio/core/v1/_overloads.py _overloads.py src/mdio/core/v1/_serializer.py _serializer.py src/mdio/core/v1/builder.py builder.py src/mdio/core/v1/factory.py factory.py src/mdio/schemas/builder.py builder.py src/mdio/schemas/core.py core.py src/mdio/schemas/v1/units.py units.py tests/integration/test_v1_serialization.py test_v1_serialization.py tests/unit/schema/v1/test_template_builder.py test_template_builder.py tests/unit/test_schema.py test_schema.py tests/unit/test_template_factory.py test_template_factory.py uv.lock uv.lock There are no files selected for viewing 3 changes: 3 additions & 0 deletions 3 .gitignore Show comments View file Open in desktop Original file line number Diff line number Diff line change Expand Up @@ -153,3 +153,6 @@ mdio1/* pytest-of-* tmp debugging/* # Docs docs/tutorials/output/* Loading Oops, something went wrong. Uh oh! There was an error while loading. Please reload this page. Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later. Footer © 2026 GitHub, Inc. Footer navigation Terms Privacy Security Status Community Docs Contact You can’t perform that action at this time. , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Skip to contentNavigation Menu Sign inAppearance settings AI CODE CREATIONGitHub CopilotWrite better code with AI GitHub Copilot appDirect agents from issue to merge MCP RegistryIntegrate external tools DEVELOPER WORKFLOWSActionsAutomate any workflow CodespacesInstant dev environments IssuesPlan and track work Code ReviewManage code changes Code QualityEnforce quality at merge APPLICATION SECURITYGitHub Advanced SecurityFind and fix vulnerabilities Code securitySecure your code as you build Secret protectionStop leaks before they start EXPLOREWhy GitHub Documentation Blog Changelog Marketplace View all features BY COMPANY SIZEEnterprises Small and medium teams Startups Nonprofits BY USE CASEApp Modernization DevSecOps DevOps CI/CD View all use cases BY INDUSTRYHealthcare Financial services Manufacturing Government View all industries View all solutions EXPLORE BY TOPICAI Software Development DevOps Security View all topics EXPLORE BY TYPECustomer stories Events & webinars Ebooks & reports Business insights GitHub Skills SUPPORT & SERVICESDocumentation Customer support Community forum Trust center Partners View all resources COMMUNITYGitHub SponsorsFund open source developers PROGRAMSSecurity Lab Maintainer Community GitHub Stars Archive Program REPOSITORIESTopics Trending Collections ENTERPRISE SOLUTIONSEnterprise platformAI-powered developer platform AVAILABLE ADD-ONSGitHub Advanced SecurityEnterprise-grade security features Copilot for BusinessEnterprise-grade AI features Premium SupportEnterprise-grade 24/7 support Pricing Sign in Sign upAppearance settings You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert Uh oh! There was an error while loading. Please reload this page. TGSAI /mdio-pythonPublic Notifications You must be signed in to change notification settings Fork 19 Star 42 Code Issues23 Pull requests26 Actions Projects Security and quality0 Insights Additional navigation options Code Issues Pull requests Actions Projects Security and quality Insights V1 private api#557 New issue Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Sign up for GitHub By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails. Already on GitHub? Sign in to your account Closed BrianMichell wants to merge 55 commits into TGSAI:v1 from BrianMichell:v1_private_api Conversation 2 Commits 55 Checks 0 Files changed Uh oh! There was an error while loading. Please reload this page. Closed V1 private api #557 Show file tree Hide file tree Changes from all commits Commits Show all changes 55 commits Select commit Hold shift + click to select a range f5144d0 update project metadata and deps tasansal Apr 29, 20254142ae3 Begin adding template factory BrianMichell Apr 28, 2025d2284f2 Resolve deprecated warning BrianMichell Apr 28, 20253064117 Update type hinting, default compressor to none. BrianMichell Apr 28, 2025a733bdd Testing updates BrianMichell Apr 28, 2025abc41f2 Begin work on schema construction with Xarray BrianMichell May 1, 2025b4cfd36 Add documentation BrianMichell May 2, 2025764f902 Fix serialization issues BrianMichell May 2, 2025e757823 Begin implementing a builder pattern for Datasets BrianMichell May 2, 20250ea7d1b Fix zfp in test BrianMichell May 5, 20258ead67b Begin cleanup and removal of direct xarray references BrianMichell May 5, 202535895d5 Use temp path BrianMichell May 5, 2025cf1ea01 Rename source files BrianMichell May 5, 20259386eb8 Update overloads BrianMichell May 5, 2025df3d148 Linting BrianMichell May 6, 20250fdd4a8 Linting BrianMichell May 6, 2025de8d541 Pull construction logic out of schemas directory BrianMichell May 6, 20253707279 Linting BrianMichell May 6, 2025cec107d Refactor BrianMichell May 6, 2025a67ccc2 Rename test BrianMichell May 6, 2025f58e63a Rename builder class BrianMichell May 6, 2025e53ffa9 Begin canonical dataset factory creation. BrianMichell May 6, 2025a06f8b0 Linting and cleanup BrianMichell May 7, 2025b856f58 Fix factory default dtype BrianMichell May 7, 20252787978 Fix for renamed directory BrianMichell May 7, 2025a70f63c Linting auto-fixes BrianMichell May 7, 20253c9f0ec Linting BrianMichell May 7, 2025433d908 Fix todo linting error BrianMichell May 27, 2025046a73c Fix test schema from snake to camel case BrianMichell May 27, 20258fa4b68 Add JSON serialization test BrianMichell May 27, 202526d2db5 Ensure zarr v2 kwarg present and correct BrianMichell May 27, 202517e4029 Fix iterator BrianMichell May 27, 2025d83abbd Resolve serialization issues to/from JSON BrianMichell May 27, 2025afbd5fa Remove vestigial testing source file BrianMichell May 28, 20252845d13 Cleanup BrianMichell May 28, 2025617a690 Cleanup BrianMichell May 28, 2025308d79e Relock deps BrianMichell May 28, 20257b03da4 Cleanup pyproject toml BrianMichell May 28, 202531c294b Fix missing import BrianMichell May 28, 2025aa5cf85 Remove excess function import from init BrianMichell May 28, 2025aba7637 Linting BrianMichell May 28, 2025ea82767 Fix output not being written to temp path BrianMichell May 28, 20253b49dc8 Expand testcases BrianMichell May 29, 2025f064ec6 Adds json dump overload BrianMichell May 30, 2025cfe234c Fix metadata serialization BrianMichell May 30, 20258a460ba Add convenience to_mdio function to write metadata BrianMichell May 30, 202570feb35 Update tests BrianMichell May 30, 2025fe2c84b Begin documentation BrianMichell May 30, 2025df8de57 Remove accidental local change BrianMichell May 30, 2025b7f607c Add contract factory creation method BrianMichell May 30, 2025de2b735 Linting BrianMichell May 30, 202585a2adb Fix tests until proposed PR is merged BrianMichell May 30, 202587e4a82 Fix deprecated zarr_version kwarg BrianMichell May 30, 2025b39f8c6 Linting BrianMichell May 30, 2025006f614 Fix example run BrianMichell Jun 2, 2025 File filter Filter by extension Filter by extension .ipynb (1) .lock (1) .md (1) .py (13) .toml (1) dotfile (1) All 6 file types selected Only manifest files Deleted files Viewed files Clear filters Conversations Failed to load comments. 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Diff view Unified Split Hide whitespace Diff view Unified Split Hide whitespace .gitignore .gitignore docs/tutorials/builder.ipynb builder.ipynb docs/tutorials/builder.md builder.md noxfile.py noxfile.py pyproject.toml pyproject.toml src/mdio/core/v1/__init__.py __init__.py src/mdio/core/v1/_overloads.py _overloads.py src/mdio/core/v1/_serializer.py _serializer.py src/mdio/core/v1/builder.py builder.py src/mdio/core/v1/factory.py factory.py src/mdio/schemas/builder.py builder.py src/mdio/schemas/core.py core.py src/mdio/schemas/v1/units.py units.py tests/integration/test_v1_serialization.py test_v1_serialization.py tests/unit/schema/v1/test_template_builder.py test_template_builder.py tests/unit/test_schema.py test_schema.py tests/unit/test_template_factory.py test_template_factory.py uv.lock uv.lock There are no files selected for viewing 3 changes: 3 additions & 0 deletions 3 .gitignore Show comments View file Open in desktop Original file line number Diff line number Diff line change Expand Up @@ -153,3 +153,6 @@ mdio1/* pytest-of-* tmp debugging/* # Docs docs/tutorials/output/* Loading Oops, something went wrong. 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Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert Uh oh! There was an error while loading. Please reload this page. TGSAI /mdio-pythonPublic Notifications You must be signed in to change notification settings Fork 19 Star 42 Code Issues23 Pull requests26 Actions Projects Security and quality0 Insights Additional navigation options Code Issues Pull requests Actions Projects Security and quality Insights V1 private api#557 New issue Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Sign up for GitHub By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails. Already on GitHub? Sign in to your account Closed BrianMichell wants to merge 55 commits into TGSAI:v1 from BrianMichell:v1_private_api Conversation 2 Commits 55 Checks 0 Files changed Uh oh! There was an error while loading. Please reload this page. Closed V1 private api #557 Show file tree Hide file tree Changes from all commits Commits Show all changes 55 commits Select commit Hold shift + click to select a range f5144d0 update project metadata and deps tasansal Apr 29, 20254142ae3 Begin adding template factory BrianMichell Apr 28, 2025d2284f2 Resolve deprecated warning BrianMichell Apr 28, 20253064117 Update type hinting, default compressor to none. BrianMichell Apr 28, 2025a733bdd Testing updates BrianMichell Apr 28, 2025abc41f2 Begin work on schema construction with Xarray BrianMichell May 1, 2025b4cfd36 Add documentation BrianMichell May 2, 2025764f902 Fix serialization issues BrianMichell May 2, 2025e757823 Begin implementing a builder pattern for Datasets BrianMichell May 2, 20250ea7d1b Fix zfp in test BrianMichell May 5, 20258ead67b Begin cleanup and removal of direct xarray references BrianMichell May 5, 202535895d5 Use temp path BrianMichell May 5, 2025cf1ea01 Rename source files BrianMichell May 5, 20259386eb8 Update overloads BrianMichell May 5, 2025df3d148 Linting BrianMichell May 6, 20250fdd4a8 Linting BrianMichell May 6, 2025de8d541 Pull construction logic out of schemas directory BrianMichell May 6, 20253707279 Linting BrianMichell May 6, 2025cec107d Refactor BrianMichell May 6, 2025a67ccc2 Rename test BrianMichell May 6, 2025f58e63a Rename builder class BrianMichell May 6, 2025e53ffa9 Begin canonical dataset factory creation. BrianMichell May 6, 2025a06f8b0 Linting and cleanup BrianMichell May 7, 2025b856f58 Fix factory default dtype BrianMichell May 7, 20252787978 Fix for renamed directory BrianMichell May 7, 2025a70f63c Linting auto-fixes BrianMichell May 7, 20253c9f0ec Linting BrianMichell May 7, 2025433d908 Fix todo linting error BrianMichell May 27, 2025046a73c Fix test schema from snake to camel case BrianMichell May 27, 20258fa4b68 Add JSON serialization test BrianMichell May 27, 202526d2db5 Ensure zarr v2 kwarg present and correct BrianMichell May 27, 202517e4029 Fix iterator BrianMichell May 27, 2025d83abbd Resolve serialization issues to/from JSON BrianMichell May 27, 2025afbd5fa Remove vestigial testing source file BrianMichell May 28, 20252845d13 Cleanup BrianMichell May 28, 2025617a690 Cleanup BrianMichell May 28, 2025308d79e Relock deps BrianMichell May 28, 20257b03da4 Cleanup pyproject toml BrianMichell May 28, 202531c294b Fix missing import BrianMichell May 28, 2025aa5cf85 Remove excess function import from init BrianMichell May 28, 2025aba7637 Linting BrianMichell May 28, 2025ea82767 Fix output not being written to temp path BrianMichell May 28, 20253b49dc8 Expand testcases BrianMichell May 29, 2025f064ec6 Adds json dump overload BrianMichell May 30, 2025cfe234c Fix metadata serialization BrianMichell May 30, 20258a460ba Add convenience to_mdio function to write metadata BrianMichell May 30, 202570feb35 Update tests BrianMichell May 30, 2025fe2c84b Begin documentation BrianMichell May 30, 2025df8de57 Remove accidental local change BrianMichell May 30, 2025b7f607c Add contract factory creation method BrianMichell May 30, 2025de2b735 Linting BrianMichell May 30, 202585a2adb Fix tests until proposed PR is merged BrianMichell May 30, 202587e4a82 Fix deprecated zarr_version kwarg BrianMichell May 30, 2025b39f8c6 Linting BrianMichell May 30, 2025006f614 Fix example run BrianMichell Jun 2, 2025 File filter Filter by extension Filter by extension .ipynb (1) .lock (1) .md (1) .py (13) .toml (1) dotfile (1) All 6 file types selected Only manifest files Deleted files Viewed files Clear filters Conversations Failed to load comments. 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Diff view Unified Split Hide whitespace Diff view Unified Split Hide whitespace .gitignore .gitignore docs/tutorials/builder.ipynb builder.ipynb docs/tutorials/builder.md builder.md noxfile.py noxfile.py pyproject.toml pyproject.toml src/mdio/core/v1/__init__.py __init__.py src/mdio/core/v1/_overloads.py _overloads.py src/mdio/core/v1/_serializer.py _serializer.py src/mdio/core/v1/builder.py builder.py src/mdio/core/v1/factory.py factory.py src/mdio/schemas/builder.py builder.py src/mdio/schemas/core.py core.py src/mdio/schemas/v1/units.py units.py tests/integration/test_v1_serialization.py test_v1_serialization.py tests/unit/schema/v1/test_template_builder.py test_template_builder.py tests/unit/test_schema.py test_schema.py tests/unit/test_template_factory.py test_template_factory.py uv.lock uv.lock There are no files selected for viewing 3 changes: 3 additions & 0 deletions 3 .gitignore Show comments View file Open in desktop Original file line number Diff line number Diff line change Expand Up @@ -153,3 +153,6 @@ mdio1/* pytest-of-* tmp debugging/* # Docs docs/tutorials/output/* Loading Oops, something went wrong. 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