address issues with VS Code dev containers (see issue 559)#576

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Merged
tasansal merged 9 commits into from
Aug 7, 2025
Merged

address issues with VS Code dev containers (see issue 559) #576

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7ff26e7
Templates and TemplateRegistry
dmitriyrepin Jul 17, 2025
5ae7258
Merge remote-tracking branch 'upstream/v1' into v1
dmitriyrepin Jul 17, 2025
e8b95dc
Fix pre-commit issues
dmitriyrepin Jul 17, 2025
be772c7
Rever dev container changes
dmitriyrepin Jul 18, 2025
e43e4da
PR Review: address issues
dmitriyrepin Jul 18, 2025
80dd234
PR Review: register default templates at registry initialization
dmitriyrepin Jul 18, 2025
7caca55
Merge remote-tracking branch 'upstream/v1' into v1
dmitriyrepin Jul 22, 2025
2b2acf2
Dockerfile.dev
dmitriyrepin Jul 22, 2025
8fd5033
Merge branch 'v1' into v1
tasansal Aug 7, 2025
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46 changes: 46 additions & 0 deletions .devcontainer/Dockerfile.dev
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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files
21 changes: 12 additions & 9 deletions .devcontainer/devcontainer.json
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
"build": {
"dockerfile": "Dockerfile",
"dockerfile": "Dockerfile.dev",
"context": ".."
},
// Use 'postCreateCommand' to run commands after the container is created.
"postCreateCommand": {
"post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
},
// Forward 8787 to enable us to view dask dashboard
"forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
// Configure properties specific to VS Code.
"vscode": {
"settings": {
"python.terminal.activateEnvInCurrentTerminal": true,
"python.defaultInterpreterPath": "/opt/venv/bin/python"
"python.testing.pytestArgs": ["tests"],
"python.testing.unittestEnabled": false,
"python.testing.pytestEnabled": true
},
"extensions": [
"ms-python.python",
Expand All@@ -27,17 +28,19 @@
"ms-toolsai.jupyter-renderers",
"vscode-icons-team.vscode-icons",
"wayou.vscode-todo-highlight",
"streetsidesoftware.code-spell-checker"
"streetsidesoftware.code-spell-checker",
"eamodio.gitlens",
"visualstudioexptteam.vscodeintellicode",
"richie5um2.vscode-sort-json"
]
}
},
// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
// "remoteUser": "root",
"updateRemoteUserUID": true,
"workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
"workspaceFolder": "/workspaces/mdio-python",
"mounts": [
// Re-use local Git configuration
"source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
"source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
"source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
// "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
]
}
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
address issues with VS Code dev containers (see issue 559)#576

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to your account

 Merged

tasansal
merged 9 commits into

from

Aug 7, 2025
 Merged


address issues with VS Code dev containers (see issue 559)
#576
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7ff26e7

Templates and TemplateRegistry


dmitriyrepin Jul 17, 2025
5ae7258

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 17, 2025
e8b95dc

Fix pre-commit issues


dmitriyrepin Jul 17, 2025
be772c7

Rever dev container changes


dmitriyrepin Jul 18, 2025
e43e4da

PR Review: address issues


dmitriyrepin Jul 18, 2025
80dd234

PR Review: register default templates at registry initialization


dmitriyrepin Jul 18, 2025
7caca55

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 22, 2025
2b2acf2

Dockerfile.dev


dmitriyrepin Jul 22, 2025
8fd5033

Merge branch 'v1' into v1


tasansal Aug 7, 2025

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46 changes: 46 additions & 0 deletions
.devcontainer/Dockerfile.dev

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files

21 changes: 12 additions & 9 deletions
.devcontainer/devcontainer.json

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
 "build": {
 "dockerfile": "Dockerfile",
 "dockerfile": "Dockerfile.dev",
 "context": ".."
 },
 // Use 'postCreateCommand' to run commands after the container is created.
 "postCreateCommand": {
 "post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
 },
 // Forward 8787 to enable us to view dask dashboard
 "forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
 // Configure properties specific to VS Code.
 "vscode": {
 "settings": {
 "python.terminal.activateEnvInCurrentTerminal": true,
 "python.defaultInterpreterPath": "/opt/venv/bin/python"
 "python.testing.pytestArgs": ["tests"],
 "python.testing.unittestEnabled": false,
 "python.testing.pytestEnabled": true
 },
 "extensions": [
 "ms-python.python",
Expand All@@ -27,17 +28,19 @@
 "ms-toolsai.jupyter-renderers",
 "vscode-icons-team.vscode-icons",
 "wayou.vscode-todo-highlight",
 "streetsidesoftware.code-spell-checker"
 "streetsidesoftware.code-spell-checker",
 "eamodio.gitlens",
 "visualstudioexptteam.vscodeintellicode",
 "richie5um2.vscode-sort-json"
 ]
 }
 },
 // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 // "remoteUser": "root",
 "updateRemoteUserUID": true,
 "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
 "workspaceFolder": "/workspaces/mdio-python",
 "mounts": [
 // Re-use local Git configuration
 "source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
 // "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
 ]
}
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
address issues with VS Code dev containers (see issue 559)#576

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

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privacy statement. We’ll occasionally send you account related emails.

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to your account

 Merged

tasansal
merged 9 commits into

from

Aug 7, 2025
 Merged


address issues with VS Code dev containers (see issue 559)
#576
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7ff26e7

Templates and TemplateRegistry


dmitriyrepin Jul 17, 2025
5ae7258

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 17, 2025
e8b95dc

Fix pre-commit issues


dmitriyrepin Jul 17, 2025
be772c7

Rever dev container changes


dmitriyrepin Jul 18, 2025
e43e4da

PR Review: address issues


dmitriyrepin Jul 18, 2025
80dd234

PR Review: register default templates at registry initialization


dmitriyrepin Jul 18, 2025
7caca55

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 22, 2025
2b2acf2

Dockerfile.dev


dmitriyrepin Jul 22, 2025
8fd5033

Merge branch 'v1' into v1


tasansal Aug 7, 2025

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46 changes: 46 additions & 0 deletions
.devcontainer/Dockerfile.dev

View file


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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files

21 changes: 12 additions & 9 deletions
.devcontainer/devcontainer.json

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
 "build": {
 "dockerfile": "Dockerfile",
 "dockerfile": "Dockerfile.dev",
 "context": ".."
 },
 // Use 'postCreateCommand' to run commands after the container is created.
 "postCreateCommand": {
 "post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
 },
 // Forward 8787 to enable us to view dask dashboard
 "forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
 // Configure properties specific to VS Code.
 "vscode": {
 "settings": {
 "python.terminal.activateEnvInCurrentTerminal": true,
 "python.defaultInterpreterPath": "/opt/venv/bin/python"
 "python.testing.pytestArgs": ["tests"],
 "python.testing.unittestEnabled": false,
 "python.testing.pytestEnabled": true
 },
 "extensions": [
 "ms-python.python",
Expand All@@ -27,17 +28,19 @@
 "ms-toolsai.jupyter-renderers",
 "vscode-icons-team.vscode-icons",
 "wayou.vscode-todo-highlight",
 "streetsidesoftware.code-spell-checker"
 "streetsidesoftware.code-spell-checker",
 "eamodio.gitlens",
 "visualstudioexptteam.vscodeintellicode",
 "richie5um2.vscode-sort-json"
 ]
 }
 },
 // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 // "remoteUser": "root",
 "updateRemoteUserUID": true,
 "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
 "workspaceFolder": "/workspaces/mdio-python",
 "mounts": [
 // Re-use local Git configuration
 "source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
 // "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
 ]
}
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
address issues with VS Code dev containers (see issue 559)#576

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 Merged

tasansal
merged 9 commits into

from

Aug 7, 2025
 Merged


address issues with VS Code dev containers (see issue 559)
#576
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7ff26e7

Templates and TemplateRegistry


dmitriyrepin Jul 17, 2025
5ae7258

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 17, 2025
e8b95dc

Fix pre-commit issues


dmitriyrepin Jul 17, 2025
be772c7

Rever dev container changes


dmitriyrepin Jul 18, 2025
e43e4da

PR Review: address issues


dmitriyrepin Jul 18, 2025
80dd234

PR Review: register default templates at registry initialization


dmitriyrepin Jul 18, 2025
7caca55

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 22, 2025
2b2acf2

Dockerfile.dev


dmitriyrepin Jul 22, 2025
8fd5033

Merge branch 'v1' into v1


tasansal Aug 7, 2025

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46 changes: 46 additions & 0 deletions
.devcontainer/Dockerfile.dev

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files

21 changes: 12 additions & 9 deletions
.devcontainer/devcontainer.json

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
 "build": {
 "dockerfile": "Dockerfile",
 "dockerfile": "Dockerfile.dev",
 "context": ".."
 },
 // Use 'postCreateCommand' to run commands after the container is created.
 "postCreateCommand": {
 "post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
 },
 // Forward 8787 to enable us to view dask dashboard
 "forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
 // Configure properties specific to VS Code.
 "vscode": {
 "settings": {
 "python.terminal.activateEnvInCurrentTerminal": true,
 "python.defaultInterpreterPath": "/opt/venv/bin/python"
 "python.testing.pytestArgs": ["tests"],
 "python.testing.unittestEnabled": false,
 "python.testing.pytestEnabled": true
 },
 "extensions": [
 "ms-python.python",
Expand All@@ -27,17 +28,19 @@
 "ms-toolsai.jupyter-renderers",
 "vscode-icons-team.vscode-icons",
 "wayou.vscode-todo-highlight",
 "streetsidesoftware.code-spell-checker"
 "streetsidesoftware.code-spell-checker",
 "eamodio.gitlens",
 "visualstudioexptteam.vscodeintellicode",
 "richie5um2.vscode-sort-json"
 ]
 }
 },
 // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 // "remoteUser": "root",
 "updateRemoteUserUID": true,
 "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
 "workspaceFolder": "/workspaces/mdio-python",
 "mounts": [
 // Re-use local Git configuration
 "source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
 // "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
 ]
}
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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address issues with VS Code dev containers (see issue 559)#576

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to your account

 Merged

tasansal
merged 9 commits into

from

Aug 7, 2025
 Merged


address issues with VS Code dev containers (see issue 559)
#576
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7ff26e7

Templates and TemplateRegistry


dmitriyrepin Jul 17, 2025
5ae7258

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 17, 2025
e8b95dc

Fix pre-commit issues


dmitriyrepin Jul 17, 2025
be772c7

Rever dev container changes


dmitriyrepin Jul 18, 2025
e43e4da

PR Review: address issues


dmitriyrepin Jul 18, 2025
80dd234

PR Review: register default templates at registry initialization


dmitriyrepin Jul 18, 2025
7caca55

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 22, 2025
2b2acf2

Dockerfile.dev


dmitriyrepin Jul 22, 2025
8fd5033

Merge branch 'v1' into v1


tasansal Aug 7, 2025

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46 changes: 46 additions & 0 deletions
.devcontainer/Dockerfile.dev

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files

21 changes: 12 additions & 9 deletions
.devcontainer/devcontainer.json

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
 "build": {
 "dockerfile": "Dockerfile",
 "dockerfile": "Dockerfile.dev",
 "context": ".."
 },
 // Use 'postCreateCommand' to run commands after the container is created.
 "postCreateCommand": {
 "post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
 },
 // Forward 8787 to enable us to view dask dashboard
 "forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
 // Configure properties specific to VS Code.
 "vscode": {
 "settings": {
 "python.terminal.activateEnvInCurrentTerminal": true,
 "python.defaultInterpreterPath": "/opt/venv/bin/python"
 "python.testing.pytestArgs": ["tests"],
 "python.testing.unittestEnabled": false,
 "python.testing.pytestEnabled": true
 },
 "extensions": [
 "ms-python.python",
Expand All@@ -27,17 +28,19 @@
 "ms-toolsai.jupyter-renderers",
 "vscode-icons-team.vscode-icons",
 "wayou.vscode-todo-highlight",
 "streetsidesoftware.code-spell-checker"
 "streetsidesoftware.code-spell-checker",
 "eamodio.gitlens",
 "visualstudioexptteam.vscodeintellicode",
 "richie5um2.vscode-sort-json"
 ]
 }
 },
 // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 // "remoteUser": "root",
 "updateRemoteUserUID": true,
 "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
 "workspaceFolder": "/workspaces/mdio-python",
 "mounts": [
 // Re-use local Git configuration
 "source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
 // "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
 ]
}
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
address issues with VS Code dev containers (see issue 559)#576

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Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

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privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
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to your account

 Merged

tasansal
merged 9 commits into

from

Aug 7, 2025
 Merged


address issues with VS Code dev containers (see issue 559)
#576
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7ff26e7

Templates and TemplateRegistry


dmitriyrepin Jul 17, 2025
5ae7258

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 17, 2025
e8b95dc

Fix pre-commit issues


dmitriyrepin Jul 17, 2025
be772c7

Rever dev container changes


dmitriyrepin Jul 18, 2025
e43e4da

PR Review: address issues


dmitriyrepin Jul 18, 2025
80dd234

PR Review: register default templates at registry initialization


dmitriyrepin Jul 18, 2025
7caca55

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 22, 2025
2b2acf2

Dockerfile.dev


dmitriyrepin Jul 22, 2025
8fd5033

Merge branch 'v1' into v1


tasansal Aug 7, 2025

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46 changes: 46 additions & 0 deletions
.devcontainer/Dockerfile.dev

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files

21 changes: 12 additions & 9 deletions
.devcontainer/devcontainer.json

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
 "build": {
 "dockerfile": "Dockerfile",
 "dockerfile": "Dockerfile.dev",
 "context": ".."
 },
 // Use 'postCreateCommand' to run commands after the container is created.
 "postCreateCommand": {
 "post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
 },
 // Forward 8787 to enable us to view dask dashboard
 "forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
 // Configure properties specific to VS Code.
 "vscode": {
 "settings": {
 "python.terminal.activateEnvInCurrentTerminal": true,
 "python.defaultInterpreterPath": "/opt/venv/bin/python"
 "python.testing.pytestArgs": ["tests"],
 "python.testing.unittestEnabled": false,
 "python.testing.pytestEnabled": true
 },
 "extensions": [
 "ms-python.python",
Expand All@@ -27,17 +28,19 @@
 "ms-toolsai.jupyter-renderers",
 "vscode-icons-team.vscode-icons",
 "wayou.vscode-todo-highlight",
 "streetsidesoftware.code-spell-checker"
 "streetsidesoftware.code-spell-checker",
 "eamodio.gitlens",
 "visualstudioexptteam.vscodeintellicode",
 "richie5um2.vscode-sort-json"
 ]
 }
 },
 // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 // "remoteUser": "root",
 "updateRemoteUserUID": true,
 "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
 "workspaceFolder": "/workspaces/mdio-python",
 "mounts": [
 // Re-use local Git configuration
 "source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
 // "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
 ]
}
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
address issues with VS Code dev containers (see issue 559)#576

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

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privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
Sign in
to your account

 Merged

tasansal
merged 9 commits into

from

Aug 7, 2025
 Merged


address issues with VS Code dev containers (see issue 559)
#576
Show file tree
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7ff26e7

Templates and TemplateRegistry


dmitriyrepin Jul 17, 2025
5ae7258

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 17, 2025
e8b95dc

Fix pre-commit issues


dmitriyrepin Jul 17, 2025
be772c7

Rever dev container changes


dmitriyrepin Jul 18, 2025
e43e4da

PR Review: address issues


dmitriyrepin Jul 18, 2025
80dd234

PR Review: register default templates at registry initialization


dmitriyrepin Jul 18, 2025
7caca55

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 22, 2025
2b2acf2

Dockerfile.dev


dmitriyrepin Jul 22, 2025
8fd5033

Merge branch 'v1' into v1


tasansal Aug 7, 2025

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46 changes: 46 additions & 0 deletions
.devcontainer/Dockerfile.dev

View file


Open in desktop

Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files

21 changes: 12 additions & 9 deletions
.devcontainer/devcontainer.json

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
 "build": {
 "dockerfile": "Dockerfile",
 "dockerfile": "Dockerfile.dev",
 "context": ".."
 },
 // Use 'postCreateCommand' to run commands after the container is created.
 "postCreateCommand": {
 "post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
 },
 // Forward 8787 to enable us to view dask dashboard
 "forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
 // Configure properties specific to VS Code.
 "vscode": {
 "settings": {
 "python.terminal.activateEnvInCurrentTerminal": true,
 "python.defaultInterpreterPath": "/opt/venv/bin/python"
 "python.testing.pytestArgs": ["tests"],
 "python.testing.unittestEnabled": false,
 "python.testing.pytestEnabled": true
 },
 "extensions": [
 "ms-python.python",
Expand All@@ -27,17 +28,19 @@
 "ms-toolsai.jupyter-renderers",
 "vscode-icons-team.vscode-icons",
 "wayou.vscode-todo-highlight",
 "streetsidesoftware.code-spell-checker"
 "streetsidesoftware.code-spell-checker",
 "eamodio.gitlens",
 "visualstudioexptteam.vscodeintellicode",
 "richie5um2.vscode-sort-json"
 ]
 }
 },
 // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 // "remoteUser": "root",
 "updateRemoteUserUID": true,
 "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
 "workspaceFolder": "/workspaces/mdio-python",
 "mounts": [
 // Re-use local Git configuration
 "source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
 // "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
 ]
}
Loading

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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address issues with VS Code dev containers (see issue 559)#576

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 Merged

tasansal
merged 9 commits into

from

Aug 7, 2025
 Merged


address issues with VS Code dev containers (see issue 559)
#576
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7ff26e7

Templates and TemplateRegistry


dmitriyrepin Jul 17, 2025
5ae7258

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 17, 2025
e8b95dc

Fix pre-commit issues


dmitriyrepin Jul 17, 2025
be772c7

Rever dev container changes


dmitriyrepin Jul 18, 2025
e43e4da

PR Review: address issues


dmitriyrepin Jul 18, 2025
80dd234

PR Review: register default templates at registry initialization


dmitriyrepin Jul 18, 2025
7caca55

Merge remote-tracking branch 'upstream/v1' into v1


dmitriyrepin Jul 22, 2025
2b2acf2

Dockerfile.dev


dmitriyrepin Jul 22, 2025
8fd5033

Merge branch 'v1' into v1


tasansal Aug 7, 2025

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46 changes: 46 additions & 0 deletions
.devcontainer/Dockerfile.dev

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,46 @@
# USAGE:
# This file will be used by the VS Code DevContainer extension
# to create a development environment for the mdio-python project.
# HOW TO MANUALLY BUILD AND DEBUG THE CONTAINER
# docker build -t mdio-dev -f .devcontainer/Dockerfile.dev .
# docker run -it --rm --entrypoint /bin/bash --name mdio-dev mdio-dev
# NOTES:
# 1. The container will be run as the non-root user 'vscode' with UID 1000.
# 2. The virtual environment will be setup at /home/vscode/.venv
# 3. The project source code will be host-mounted at /workspaces/mdio-python
ARG PYTHON_VERSION="3.13"
ARG LINUX_DISTRO="bookworm"
ARG UV_VERSION="0.6.11"
FROM mcr.microsoft.com/devcontainers/python:1-${PYTHON_VERSION}-${LINUX_DISTRO}

ENV USERNAME="vscode"
USER $USERNAME

COPY --chown=$USERNAME:$USERNAME ./ /workspaces/mdio-python

WORKDIR /workspaces/mdio-python

ARG UV_VERSION
# Install UV as described in https://devblogs.microsoft.com/ise/dockerizing-uv/
RUN python3 -m pip install --no-cache-dir uv==${UV_VERSION}
# Prevent uv from trying to create hard links, which does not work in a container
# that mounts local file systems (e.g. VS Code Dev Containers)
ENV UV_LINK_MODE=copy
# Add path to the site-packages
ENV PYTHONUSERBASE=/home/$USERNAME/.local
ENV PATH="$PYTHONUSERBASE/bin:$PATH"

# Initialize virtual environment in the container
ENV VIRTUAL_ENV="/home/$USERNAME/.venv"
ENV UV_PROJECT_ENVIRONMENT=$VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"
RUN uv venv $VIRTUAL_ENV

# Install the project in the editable mode
# https://setuptools.pypa.io/en/latest/userguide/development_mode.html
# This allows for live reloading of the code during development
RUN uv pip install -e .
# Install "extras" (development dependencies) in pyproject.toml
RUN uv sync --group dev
# Now one can run:
# pre-commit run --all-files

21 changes: 12 additions & 9 deletions
.devcontainer/devcontainer.json

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Original file line numberDiff line numberDiff line change
Expand Up@@ -2,12 +2,12 @@
// README at: https://github.com/devcontainers/templates/tree/main/src/python
{
 "build": {
 "dockerfile": "Dockerfile",
 "dockerfile": "Dockerfile.dev",
 "context": ".."
 },
 // Use 'postCreateCommand' to run commands after the container is created.
 "postCreateCommand": {
 "post_create_script": "bash ./.devcontainer/post-install.sh"
// "post_create_script": "bash ./.devcontainer/post-install.sh"
 },
 // Forward 8787 to enable us to view dask dashboard
 "forwardPorts": [8787],
Expand All@@ -16,8 +16,9 @@
 // Configure properties specific to VS Code.
 "vscode": {
 "settings": {
 "python.terminal.activateEnvInCurrentTerminal": true,
 "python.defaultInterpreterPath": "/opt/venv/bin/python"
 "python.testing.pytestArgs": ["tests"],
 "python.testing.unittestEnabled": false,
 "python.testing.pytestEnabled": true
 },
 "extensions": [
 "ms-python.python",
Expand All@@ -27,17 +28,19 @@
 "ms-toolsai.jupyter-renderers",
 "vscode-icons-team.vscode-icons",
 "wayou.vscode-todo-highlight",
 "streetsidesoftware.code-spell-checker"
 "streetsidesoftware.code-spell-checker",
 "eamodio.gitlens",
 "visualstudioexptteam.vscodeintellicode",
 "richie5um2.vscode-sort-json"
 ]
 }
 },
 // Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root.
 // "remoteUser": "root",
 "updateRemoteUserUID": true,
 "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/mdio-python,type=bind",
 "workspaceFolder": "/workspaces/mdio-python",
 "mounts": [
 // Re-use local Git configuration
 "source=${localEnv:HOME}/.gitconfig,target=/home/vscode/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:HOME}/.gitconfig,target=/root/.gitconfig_tmp,type=bind,consistency=cached",
 "source=${localEnv:SCRATCH_DIR}/${localEnv:USER},target=/scratch/,type=bind,consistency=cached"
 // "source=${localWorkspaceFolder}/../DATA/,target=/DATA/,type=bind,consistency=cached"
 ]
}
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