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Advanced Informatics, Winter 2021

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Nuke your conda!

It is useful to know how to entirely get rid of all things conda. On a Unix-like system.

First remove the installation itself and all config/cache files:

rm -rf ~/miniconda3 ~/.conda*

Then, you will want to remove what it added to your login scripts to auto-activate your base environment when you log in. On a Linux machine, that file is ~/.bashrc. On macOS, I believe is it ~/.bash_profile. In either case, there's a "dotfile" for your shell, the end of which has a chunk of shell code related to conda. On my machine, it looks like this:

# >>> conda initialize >>># !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/home/condauser/miniconda3/bin/conda''shell.bash''hook'2> /dev/null)"if [ $?-eq 0 ];theneval"$__conda_setup"elseif [ -f"/home/condauser/miniconda3/etc/profile.d/conda.sh" ];then."/home/condauser/miniconda3/etc/profile.d/conda.sh"elseexport PATH="/home/condauser/miniconda3/bin:$PATH"fifiunset __conda_setup
# <<< conda initialize <<<

Use your favorite text editor to remove that. Restart your shell/terminal, and you are now free from conda! You can re-install now.

Week 2

  • Notes on conda and R Studio

Lab exercises

Week 1

For this week:

  1. Set up a new repository. The repo name will be AdvancedInformaticsExercises.
  2. The README.md file will be the landing point for a website.
  3. Submit a pull request that adds some random text somewhere in the README.

Week2

Slides for this week. See here for instructions.

Week 3

Week 4

Week 5

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