Pinned Loading

1. sentinel-cdsentinel-cdPublic

   Cross-sample contamination, sample-swap and identity detector for targeted NGS runs.

   Python

2. oncosieveoncosievePublic

   OncoSieve is a pan-cancer somatic variant curation pipeline that aggregates COSMIC, GENIE, ClinVar, OncoKB, and other curated sources to build a tiered whitelist for rescuing clinically relevant lo…

   Python 1

3. lymphixlymphixPublic

   BCR/TCR clonality from custom-panel NGS — TRUST4 + IgBLAST, Nextflow, DNAnexus-ready

   Python 1

4. ProbeScopeProbeScopePublic

   A command-line tool for generating per-gene coverage track plots from BAM files, overlaid on panel target BED annotations with MANE-Select exon models.

   Python 1

5. quasar-svquasar-svPublic

   Quasar is a structural-variant caller for next-generation sequencing data, specialised for lymphoma diagnostics.

   Python 1

6. tempest-ashmtempest-ashmPublic

   Aberrant somatic hypermutation signature scoring for lymphoid malignancies

   Python