UCSC Treehouse Childhood Cancer Initiative

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1. mend_qc mend_qcPublic

   Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file

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2. pipelines pipelinesPublic

   Makefiles to run dockerized pipelines used in Treehouse on a single sample

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3. b2f_docker b2f_dockerPublic

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4. CARE CAREPublic

   Treehouse Comparative Analysis of RNA Expression

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5. fusion-for-core fusion-for-corePublic

   UCSC Treehouse Gene Fusion Analysis Pipeline

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6. hub hubPublic

   Tooling to spin up and manage jupyter, nbviewer, xena for tertiary analyis

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