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  1. GEMSTAT GEMSTATPublic

    Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++ 6 8

  2. VarSAn VarSAnPublic

    R 2 1

  3. GEMSTAT_refinement_sampler GEMSTAT_refinement_samplerPublic

    A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

    Shell 1 1

  4. Enhancer-Activity-Predictor Enhancer-Activity-PredictorPublic

    R 1

  5. lncRNARN lncRNARNPublic

    Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

    R 1

  6. SinhaLab_Infrastructure SinhaLab_InfrastructurePublic

    Workaround because we have an ancient Linux distribution

    Shell

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, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
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(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
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btn.onmouseover = function() { this.style.opacity = '1'; };
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navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
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addCopyButtons();
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var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
UIUCSinhaLab · GitHub
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@UIUCSinhaLab

UIUCSinhaLab


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  1. 
GEMSTAT
GEMSTATPublic
    
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++
6

8

  2. 
VarSAn
VarSAnPublic
    R
2

1

  3. 
GEMSTAT_refinement_sampler
GEMSTAT_refinement_samplerPublic
    
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

    Shell
1

1

  4. 
Enhancer-Activity-Predictor
Enhancer-Activity-PredictorPublic
    R
1

  5. 
lncRNARN
lncRNARNPublic
    
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

    R
1

  6. 
SinhaLab_Infrastructure
SinhaLab_InfrastructurePublic
    
Workaround because we have an ancient Linux distribution

    Shell

Repositories

Showing 10 of 28 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
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.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
UIUCSinhaLab · GitHub
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@UIUCSinhaLab

UIUCSinhaLab


Popular repositories
Loading
  1. 
GEMSTAT
GEMSTATPublic
    
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++
6

8

  2. 
VarSAn
VarSAnPublic
    R
2

1

  3. 
GEMSTAT_refinement_sampler
GEMSTAT_refinement_samplerPublic
    
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

    Shell
1

1

  4. 
Enhancer-Activity-Predictor
Enhancer-Activity-PredictorPublic
    R
1

  5. 
lncRNARN
lncRNARNPublic
    
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

    R
1

  6. 
SinhaLab_Infrastructure
SinhaLab_InfrastructurePublic
    
Workaround because we have an ancient Linux distribution

    Shell

Repositories

Showing 10 of 28 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
var q = url.searchParams.get('q') || url.searchParams.get('p');
if (q) {
terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
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}
if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
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Array.from(node.childNodes).forEach(highlight);
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highlight(document.body);
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var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
});
});
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observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
UIUCSinhaLab · GitHub
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@UIUCSinhaLab

UIUCSinhaLab


Popular repositories
Loading
  1. 
GEMSTAT
GEMSTATPublic
    
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++
6

8

  2. 
VarSAn
VarSAnPublic
    R
2

1

  3. 
GEMSTAT_refinement_sampler
GEMSTAT_refinement_samplerPublic
    
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

    Shell
1

1

  4. 
Enhancer-Activity-Predictor
Enhancer-Activity-PredictorPublic
    R
1

  5. 
lncRNARN
lncRNARNPublic
    
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

    R
1

  6. 
SinhaLab_Infrastructure
SinhaLab_InfrastructurePublic
    
Workaround because we have an ancient Linux distribution

    Shell

Repositories

Showing 10 of 28 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
UIUCSinhaLab · GitHub
Skip to content
@UIUCSinhaLab

UIUCSinhaLab


Popular repositories
Loading
  1. 
GEMSTAT
GEMSTATPublic
    
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++
6

8

  2. 
VarSAn
VarSAnPublic
    R
2

1

  3. 
GEMSTAT_refinement_sampler
GEMSTAT_refinement_samplerPublic
    
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

    Shell
1

1

  4. 
Enhancer-Activity-Predictor
Enhancer-Activity-PredictorPublic
    R
1

  5. 
lncRNARN
lncRNARNPublic
    
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

    R
1

  6. 
SinhaLab_Infrastructure
SinhaLab_InfrastructurePublic
    
Workaround because we have an ancient Linux distribution

    Shell

Repositories

Showing 10 of 28 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
UIUCSinhaLab · GitHub
Skip to content
@UIUCSinhaLab

UIUCSinhaLab


Popular repositories
Loading
  1. 
GEMSTAT
GEMSTATPublic
    
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++
6

8

  2. 
VarSAn
VarSAnPublic
    R
2

1

  3. 
GEMSTAT_refinement_sampler
GEMSTAT_refinement_samplerPublic
    
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

    Shell
1

1

  4. 
Enhancer-Activity-Predictor
Enhancer-Activity-PredictorPublic
    R
1

  5. 
lncRNARN
lncRNARNPublic
    
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

    R
1

  6. 
SinhaLab_Infrastructure
SinhaLab_InfrastructurePublic
    
Workaround because we have an ancient Linux distribution

    Shell

Repositories

Showing 10 of 28 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
el.style.position = 'static';
el.style.top = 'auto';
el.style.zIndex = 'auto';
}
});
}
unstick();
var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
})();
UIUCSinhaLab · GitHub
Skip to content
@UIUCSinhaLab

UIUCSinhaLab


Popular repositories
Loading
  1. 
GEMSTAT
GEMSTATPublic
    
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

    C++
6

8

  2. 
VarSAn
VarSAnPublic
    R
2

1

  3. 
GEMSTAT_refinement_sampler
GEMSTAT_refinement_samplerPublic
    
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

    Shell
1

1

  4. 
Enhancer-Activity-Predictor
Enhancer-Activity-PredictorPublic
    R
1

  5. 
lncRNARN
lncRNARNPublic
    
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

    R
1

  6. 
SinhaLab_Infrastructure
SinhaLab_InfrastructurePublic
    
Workaround because we have an ancient Linux distribution

    Shell

Repositories

Showing 10 of 28 repositories
View all repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…