VIBTOBIlab

Repository containing scripts and tutorials to reproduce the benchmarking results.

DecoNFlow is a bioinformatics analysis pipeline used for computational deconvolution of DNA methylation data. It allows deconvolution of samples using both reference-based and reference-free deconvolution tools.

Methurator is a Python package designed to estimate CpGs saturation for DNA methylation sequencing data.

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

Sillymix is a bioinformatics analysis pipeline used to perform in-silico mixtures of tumoral and healthy fastq files at specified sequencing depth (in number of reads) and tumoral fractions.

Repository to reproduce methurator paper analyses

Shiny Application for DNAmBenchmarking paper doi: 10.1101/2025.11.27.688590

Repository containing toy data to test DecoNFlow pipeline

Methylation (Bisulfite-Sequencing) analysis pipeline of cfRRBS samples using Bismark