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Van Andel Research Institute

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s3vs s3vsPublic
Demo viewer for Aperio SVS images from Amazon S3
JavaScript 14 6
slinky slinkyPublic
Putting the fun into LINCS analysis
R 7 2
lambdaR lambdaRPublic
Bringing R as runtime to AWS Lambda
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intent intentPublic
reformat inDrop fastqs so they look like 10X genomics fastqs
C++ 5
bifurcatoR bifurcatoRPublic
bifurcatoR package
R 5 7
pbsPretty pbsPrettyPublic
colorful, descriptive alternives to pbsnodes and qstat
Perl 3 1

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Showing 10 of 87 repositories

genomicsCoreFileMgmt Public
tools to manage the VAI genomics core file lifecycle
VanAndelInstitute/genomicsCoreFileMgmt's past year of commit activity
Perl 1 0 0 0 Updated Aug 21, 2026
ai_agents_md Public
and agents.md or claude.md for agents accessing HPC. Acknowledged as coming from BYU's publically avaiable example
VanAndelInstitute/ai_agents_md's past year of commit activity
0 0 0 0 Updated Aug 19, 2026
VAIDocker Public
RHEL derivative containers for user admin on compute nodes
VanAndelInstitute/VAIDocker's past year of commit activity
Shell 3GPL-2.0 0 2 0 Updated Aug 11, 2026
slurmpretty Public
slurmPretty
VanAndelInstitute/slurmpretty's past year of commit activity
Perl 0 1 0 0 Updated Aug 11, 2026
oodRstudio Public Forked from stanford-rc/sh_ood-apps
Open OnDemand apps, rstudio
VanAndelInstitute/oodRstudio's past year of commit activity
HTML 0GPL-3.0 17 0 0 Updated Jul 30, 2026
ondemand_codeserver Public Forked from OSC/bc_osc_codeserver
BETA - Batch Connect - OSC Code Server
VanAndelInstitute/ondemand_codeserver's past year of commit activity
HTML 0GPL-3.0 29 0 0 Updated Jul 30, 2026
Admin-Tools Public
Various scripts used to monitor the HPC environment.
VanAndelInstitute/Admin-Tools's past year of commit activity
Perl 2 0 0 0 Updated Jun 25, 2026
CoCnT_paper_analysis_scripts Public
VanAndelInstitute/CoCnT_paper_analysis_scripts's past year of commit activity
Jupyter Notebook 0 0 0 0 Updated Jun 3, 2026
bifurcatoR Public
bifurcatoR package
VanAndelInstitute/bifurcatoR's past year of commit activity
R 5GPL-2.0 7 0 2 Updated Jun 3, 2026
SignalFinder-Extension Public
The SignalFinder Qupath extension implements the segment and fit SignalFinder algorithm in Qupath using cell measurements instead of a sliding window analysis. This results in a vastly faster and more reliable analysis.
VanAndelInstitute/SignalFinder-Extension's past year of commit activity
0 0 0 0 Updated May 1, 2026

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