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VendenIX/README.md

Romain Andres

AI Engineer — Explainable AI & Deep Learning for Oncology and Personalized Medicine

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Portfolio & CV · Publications · LinkedIn · Email

I build deep learning systems for oncology that clinicians can actually trust — from segmentation models deployed in radiotherapy workflows to explainability pipelines that catch a model relying on the wrong signal before it reaches a clinic. Co-first author on a NeuroImage paper, first author on a manuscript currently under review. Currently looking for my next step: a CIFRE PhD or a research/AI engineer role.

🔬 Featured work

Explainability & Clinical Trust of Deep Learning in Glioblastoma Treatment Responsefirst-author manuscript, under review

A multi-layered XAI pipeline (Grad-CAM, LRP, LIME, linear probing, causal activation patching) auditing a ResNet-51q model — and catching it relying on a proxy for surgical resection status instead of real tumoral features.

Read the write-up → · Code

MetIA — Deep Learning Interface for Brain Metastases Segmentationco-first author, published in NeuroImage, Vol. 306 (2025)

UNETR-based segmentation model deployed into a clinical OHIF Viewer interface at Centre François Baclesse, from Flask API to ML Ops on the center's infrastructure.

Read the write-up → · Code

GeneticPedigreeChartToPed — Digitizing Family Trees for Hereditary Cancer Risk

A six-model computer vision pipeline (YOLO, EasyOCR, DeepLSD, graph reconstruction) turning hand-drawn pedigree charts into structured data for tools like CanRisk.

Read the write-up → · Code

🗂️ Earlier projects (coursework & side projects)
ProjectDescription
Sorting Algorithms VisualizerC++ visualizer + Python/Jupyter benchmarking of sorting algorithms across data distributions.
AI vs. AI — Virus Board GameMinimax/Alpha-Beta Pruning agents battling on a custom board game.
Todolist — React NativeFirst React project: a to-do app on a Node.js/GraphQL CRUD API.
Fractal Flowers GeneratorProcedural flora generation from scratch using L-systems (Java).

📄 Publications

TitleVenueRole
Development and routine implementation of a deep learning algorithm for automatic brain metastases segmentation on MRI for RANO-BM criteria follow-upNeuroImage, Vol. 306 (2025)Co-first author
Explainability and Clinical Trust of Deep Learning in Glioblastoma Treatment Efficacy PredictionManuscript under review (2025)First author

Full abstracts and BibTeX on the publications page.

🛠️ Tech stack

  • Deep learning & XAI: PyTorch · Grad-CAM/LRP/LIME · UNet/UNETR/ResNet · Fed-BioMed
  • Medical imaging: DICOM · NIfTI · OHIF Viewer
  • Data & backend: Python (NumPy/SciPy/pandas) · Flask · GraphQL · PostgreSQL · MongoDB
  • Tools: Docker · Kubernetes · Git · Linux

gitdockerkubernetespythonpytorchreactnativegraphqlpostgresqlmongodbjavac

Contact

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  1. BrainMetaSegmentatorUI-FrontBrainMetaSegmentatorUI-FrontPublic

    Modified OHIF Viewer with an extension for call an API who perform AI and create RTStruct for DICOMS instances

    TypeScript 8 4

  2. GBM-Treatment-Response-XAIGBM-Treatment-Response-XAIPublic

    Jupyter Notebook 1 1

  3. GeneticPedigreeChartToPedAIGeneticPedigreeChartToPedAIPublic

    This project convert charts files of genetics pedigree for the cancer (pdf, png,jpg) in .ped files using AI (combination of 6 models)

    Jupyter Notebook 2

  4. LindenmayerFractalViewerLindenmayerFractalViewerPublic

    Logiciel générateur de flores vidéo-ludiques (Visualizer of fractals forms with some rules) Lindermeyer DOL-System & SOL-System 2D & 3D with JavaFX and Swing

    Java 1

  5. Pile_Docker_GraphQL_D3.js_MongoDBPile_Docker_GraphQL_D3.js_MongoDBPublic

    Pile de containers permettant de lancer une application de visualisation des données de ventes, étudiées pendant la première partie ETL. La pile de containers comprend\ : une base de données MongoD…

    CSS

  6. datawarehouseTalenddatawarehouseTalendPublic

    Java