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1,461 Commits
00 Calibration and Analysis Scripts
00 Calibration and Analysis Scripts
01 OCT Scan and Pattern
01 OCT Scan and Pattern
02 OCT Preprocess
02 OCT Preprocess
03 Fluorescence Preprocess
03 Fluorescence Preprocess
04 Histology Preprocess
04 Histology Preprocess
11 Align OCT to Flourecence Imaging
11 Align OCT to Flourecence Imaging
12 Reslicing
12 Reslicing
13 Fine Alignment OCT to Histology
13 Fine Alignment OCT to Histology
14 Quality Control and Post Processing
14 Quality Control and Post Processing
21 Generate Dataset
21 Generate Dataset
22 Run ML
22 Run ML
23 Visualize Results
23 Visualize Results
24 Pathology Exam
24 Pathology Exam
31 NN Model
31 NN Model
32 NN Model
32 NN Model
91 Statistics
91 Statistics
97 Code Refactoring
97 Code Refactoring
98 Jenkins Lib
98 Jenkins Lib
99 Algorithms
99 Algorithms
Code
Code
Docs
Docs
Odin
Odin
.DS_Store
.DS_Store
.gitignore
.gitignore
.gitmodules
.gitmodules
README.md
README.md

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HashtagAlignment

Contains alignment algorithm MATLAB code and myOCT reslicing script in folder /Code
Contains Odin microscope tiling code in folder /Odin
Contains photobleaching code for Wasatch OCT in folder /Wasatch

To run Hashtag-Alignment Simulation:

Enter folder /Code and run file simulationv3.m

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