Yeo lab at UCSD

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1. flotilla flotillaPublic archive

   Reproducible machine learning analysis of gene expression and alternative splicing data

   Jupyter Notebook 124 24

2. single-cell-bioinformatics single-cell-bioinformaticsPublic archive

   Course material in notebook format for learning about single cell bioinformatics methods

   Jupyter Notebook 100 38

3. bento-tools bento-toolsPublic

   A Python toolkit for subcellular analysis of spatial transcriptomics data

   Python 89 8

4. clipper clipperPublic

   A tool to identify CLIP-seq peaks

   Python 73 46

5. outrigger outriggerPublic

   Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

   Python 67 22

6. eCLIP eCLIPPublic

   Common Workflow Language 42 26