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MERlin - Extensible pipeline for scalable data analysis

MERlin is an extensible data analysis pipeline for reproducible and scalable analysis of large datasets. Each MERlin workflow consists of a set of analysis tasks, each of which can be run as single task or split among many subtasks that can be executed in parallel. MERlin is able to execute workflows on a single computer, on a high performance cluster, or on the cloud (AWS and Google Cloud).

If MERlin is useful for your research, consider citing: Emanuel, G., Eichhorn, S. W., Zhuang, X. 2020, MERlin - scalable and extensible MERFISH analysis software, v0.1.6, Zenodo, doi:10.5281/zenodo.3758540

Please find the most recent version of MERlin here.

MERFISH data analysis

Image of MERlin

MERlin was originally created for decoding MERFISH datasets. MERFISH is a technology for spatially resolved RNA profiling of 10s to 10,000s of RNA species in individual cells with high accuracy and high detection efficiency. The standard MERlin MERFISH analysis workflow decodes and segments MERFISH datasets to determine RNA molecules and the cell boundaries represented in the raw images.

Documentation

For more information on installation and usage, please see the documentation.

Authors

Contributions are welcome! Please see the documentation for contribution guidelines.

About

MERFISH decoding software

Resources

Readme
MIT license

Contributing

Contributing
Activity
Custom properties

Stars

29 stars

Watchers

1 watching

Forks

7 forks
Report repository

Releases

Packages

Contributors

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GitHub - ZhuangLab/MERlin: MERFISH decoding software · GitHub
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CircleCIcodecovDOI
MERlin - Extensible pipeline for scalable data analysis
MERlin is an extensible data analysis pipeline for reproducible and scalable analysis of large
datasets. Each MERlin workflow consists of a set of analysis tasks, each of which can be run as
single task or split among many subtasks that can be executed in parallel. MERlin is able to
execute workflows on a single computer, on a high performance cluster, or on the cloud
(AWS and Google Cloud).
If MERlin is useful for your research, consider citing:
Emanuel, G., Eichhorn, S. W., Zhuang, X. 2020, MERlin - scalable and extensible MERFISH analysis software, v0.1.6, Zenodo, doi:10.5281/zenodo.3758540
Please find the most recent version of MERlin here.
MERFISH data analysis
Image of MERlin
MERlin was originally created for decoding MERFISH datasets.
MERFISH is a technology for
spatially resolved RNA profiling of 10s to 10,000s of RNA species in individual cells
with high accuracy and high detection efficiency. The standard MERlin MERFISH analysis
workflow decodes and segments MERFISH datasets to determine RNA molecules and the
cell boundaries represented in the raw images.
Documentation
For more information on installation and usage, please see the documentation.
Authors
Contributions are welcome! Please see the
documentation for contribution guidelines.
About
MERFISH decoding software
Resources
Readme
MIT license
Contributing
Contributing
Activity
Custom properties
Stars
29 stars
Watchers
1 watching
Forks
7 forks
Report repository
Releases
Packages
Contributors
Languages

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GitHub - ZhuangLab/MERlin: MERFISH decoding software · GitHub
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CircleCIcodecovDOI
MERlin - Extensible pipeline for scalable data analysis
MERlin is an extensible data analysis pipeline for reproducible and scalable analysis of large
datasets. Each MERlin workflow consists of a set of analysis tasks, each of which can be run as
single task or split among many subtasks that can be executed in parallel. MERlin is able to
execute workflows on a single computer, on a high performance cluster, or on the cloud
(AWS and Google Cloud).
If MERlin is useful for your research, consider citing:
Emanuel, G., Eichhorn, S. W., Zhuang, X. 2020, MERlin - scalable and extensible MERFISH analysis software, v0.1.6, Zenodo, doi:10.5281/zenodo.3758540
Please find the most recent version of MERlin here.
MERFISH data analysis
Image of MERlin
MERlin was originally created for decoding MERFISH datasets.
MERFISH is a technology for
spatially resolved RNA profiling of 10s to 10,000s of RNA species in individual cells
with high accuracy and high detection efficiency. The standard MERlin MERFISH analysis
workflow decodes and segments MERFISH datasets to determine RNA molecules and the
cell boundaries represented in the raw images.
Documentation
For more information on installation and usage, please see the documentation.
Authors
Contributions are welcome! Please see the
documentation for contribution guidelines.
About
MERFISH decoding software
Resources
Readme
MIT license
Contributing
Contributing
Activity
Custom properties
Stars
29 stars
Watchers
1 watching
Forks
7 forks
Report repository
Releases
Packages
Contributors
Languages

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GitHub - ZhuangLab/MERlin: MERFISH decoding software · GitHub
Skip to content
BranchesTags
Repository files navigation
CircleCIcodecovDOI
MERlin - Extensible pipeline for scalable data analysis
MERlin is an extensible data analysis pipeline for reproducible and scalable analysis of large
datasets. Each MERlin workflow consists of a set of analysis tasks, each of which can be run as
single task or split among many subtasks that can be executed in parallel. MERlin is able to
execute workflows on a single computer, on a high performance cluster, or on the cloud
(AWS and Google Cloud).
If MERlin is useful for your research, consider citing:
Emanuel, G., Eichhorn, S. W., Zhuang, X. 2020, MERlin - scalable and extensible MERFISH analysis software, v0.1.6, Zenodo, doi:10.5281/zenodo.3758540
Please find the most recent version of MERlin here.
MERFISH data analysis
Image of MERlin
MERlin was originally created for decoding MERFISH datasets.
MERFISH is a technology for
spatially resolved RNA profiling of 10s to 10,000s of RNA species in individual cells
with high accuracy and high detection efficiency. The standard MERlin MERFISH analysis
workflow decodes and segments MERFISH datasets to determine RNA molecules and the
cell boundaries represented in the raw images.
Documentation
For more information on installation and usage, please see the documentation.
Authors
Contributions are welcome! Please see the
documentation for contribution guidelines.
About
MERFISH decoding software
Resources
Readme
MIT license
Contributing
Contributing
Activity
Custom properties
Stars
29 stars
Watchers
1 watching
Forks
7 forks
Report repository
Releases
Packages
Contributors
Languages

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GitHub - ZhuangLab/MERlin: MERFISH decoding software · GitHub
Skip to content
BranchesTags
Repository files navigation
CircleCIcodecovDOI
MERlin - Extensible pipeline for scalable data analysis
MERlin is an extensible data analysis pipeline for reproducible and scalable analysis of large
datasets. Each MERlin workflow consists of a set of analysis tasks, each of which can be run as
single task or split among many subtasks that can be executed in parallel. MERlin is able to
execute workflows on a single computer, on a high performance cluster, or on the cloud
(AWS and Google Cloud).
If MERlin is useful for your research, consider citing:
Emanuel, G., Eichhorn, S. W., Zhuang, X. 2020, MERlin - scalable and extensible MERFISH analysis software, v0.1.6, Zenodo, doi:10.5281/zenodo.3758540
Please find the most recent version of MERlin here.
MERFISH data analysis
Image of MERlin
MERlin was originally created for decoding MERFISH datasets.
MERFISH is a technology for
spatially resolved RNA profiling of 10s to 10,000s of RNA species in individual cells
with high accuracy and high detection efficiency. The standard MERlin MERFISH analysis
workflow decodes and segments MERFISH datasets to determine RNA molecules and the
cell boundaries represented in the raw images.
Documentation
For more information on installation and usage, please see the documentation.
Authors
Contributions are welcome! Please see the
documentation for contribution guidelines.
About
MERFISH decoding software
Resources
Readme
MIT license
Contributing
Contributing
Activity
Custom properties
Stars
29 stars
Watchers
1 watching
Forks
7 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
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GitHub - ZhuangLab/MERlin: MERFISH decoding software · GitHub
Skip to content
BranchesTags
Repository files navigation
CircleCIcodecovDOI
MERlin - Extensible pipeline for scalable data analysis
MERlin is an extensible data analysis pipeline for reproducible and scalable analysis of large
datasets. Each MERlin workflow consists of a set of analysis tasks, each of which can be run as
single task or split among many subtasks that can be executed in parallel. MERlin is able to
execute workflows on a single computer, on a high performance cluster, or on the cloud
(AWS and Google Cloud).
If MERlin is useful for your research, consider citing:
Emanuel, G., Eichhorn, S. W., Zhuang, X. 2020, MERlin - scalable and extensible MERFISH analysis software, v0.1.6, Zenodo, doi:10.5281/zenodo.3758540
Please find the most recent version of MERlin here.
MERFISH data analysis
Image of MERlin
MERlin was originally created for decoding MERFISH datasets.
MERFISH is a technology for
spatially resolved RNA profiling of 10s to 10,000s of RNA species in individual cells
with high accuracy and high detection efficiency. The standard MERlin MERFISH analysis
workflow decodes and segments MERFISH datasets to determine RNA molecules and the
cell boundaries represented in the raw images.
Documentation
For more information on installation and usage, please see the documentation.
Authors
Contributions are welcome! Please see the
documentation for contribution guidelines.
About
MERFISH decoding software
Resources
Readme
MIT license
Contributing
Contributing
Activity
Custom properties
Stars
29 stars
Watchers
1 watching
Forks
7 forks
Report repository
Releases
Packages
Contributors
Languages

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GitHub - ZhuangLab/MERlin: MERFISH decoding software · GitHub
Skip to content
BranchesTags
Repository files navigation
CircleCIcodecovDOI
MERlin - Extensible pipeline for scalable data analysis
MERlin is an extensible data analysis pipeline for reproducible and scalable analysis of large
datasets. Each MERlin workflow consists of a set of analysis tasks, each of which can be run as
single task or split among many subtasks that can be executed in parallel. MERlin is able to
execute workflows on a single computer, on a high performance cluster, or on the cloud
(AWS and Google Cloud).
If MERlin is useful for your research, consider citing:
Emanuel, G., Eichhorn, S. W., Zhuang, X. 2020, MERlin - scalable and extensible MERFISH analysis software, v0.1.6, Zenodo, doi:10.5281/zenodo.3758540
Please find the most recent version of MERlin here.
MERFISH data analysis
Image of MERlin
MERlin was originally created for decoding MERFISH datasets.
MERFISH is a technology for
spatially resolved RNA profiling of 10s to 10,000s of RNA species in individual cells
with high accuracy and high detection efficiency. The standard MERlin MERFISH analysis
workflow decodes and segments MERFISH datasets to determine RNA molecules and the
cell boundaries represented in the raw images.
Documentation
For more information on installation and usage, please see the documentation.
Authors
Contributions are welcome! Please see the
documentation for contribution guidelines.
About
MERFISH decoding software
Resources
Readme
MIT license
Contributing
Contributing
Activity
Custom properties
Stars
29 stars
Watchers
1 watching
Forks
7 forks
Report repository
Releases
Packages
Contributors
Languages