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Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Achievements

Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Organizations

@nanoporetech@birneylab

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a-slide/README.md

Hi there 👋

I am Adrien

I am a the director of modified bases research at Oxford Nanopore

I ❤️ Python, linux and dataviz

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Adrien's github stats

Projects

pycoQCpycoMethpycoSnake
NanoCountNanocompore

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  1. SekatorSekatorPublic archive

    Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)

    Python 3 2

  2. pycoSnakepycoSnakePublic archive

    pycoSnake is a neatly wrapped collection of snakemake workflows for analysing nanopore and Illumina sequencing data

    Python 8 1

  3. pycoMethpycoMethPublic archive

    DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets

    Python 34 2

  4. versipyversipyPublic

    Versatile version and medatada managment across the python packaging ecosystem with git integration

    Python 1 1

  5. pycoQCpycoQCPublic archive

    pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

    Python 288 43

  6. NanoCountNanoCountPublic

    EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2

    Python 68 6