🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57

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bolt-bngerror-csimulator-6233764973034024898
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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
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@akutuva21akutuva21 commented Apr 9, 2026

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🧹 Bolt: Replace assert statements with structured BNGErrors

What:
Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.

Why:
To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.

Verification:
I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.

Result:
Safer error checking and logging implemented for simulation parameter setups.

PR created automatically by Jules for task 6233764973034024898 started by @akutuva21

@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
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akutuva21 commented Apr 13, 2026

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Superseded by #94 csimulator assert->BNGError transition.

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Superseded by #94 csimulator assert->BNGError transition.

Understood. Acknowledging that this work is now obsolete and stopping work on this task.

@akutuva21
akutuva21 deleted the bolt-bngerror-csimulator-6233764973034024898 branch April 13, 2026 14:46
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57
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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
akutuva21 wants to merge 3 commits into
mainfrom 
bolt-bngerror-csimulator-6233764973034024898
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🧹 Bolt: Replace assert statements with structured BNGErrors
What:

Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.
Why:

To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.
Verification:

I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.
Result:

Safer error checking and logging implemented for simulation parameter setups.
PR created automatically by Jules for task 6233764973034024898 started by @akutuva21
@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
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Superseded by #94 csimulator assert->BNGError transition.
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Apr 13, 2026

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Superseded by #94 csimulator assert->BNGError transition.
Understood. Acknowledging that this work is now obsolete and stopping work on this task.
@akutuva21
akutuva21
deleted the

bolt-bngerror-csimulator-6233764973034024898

branch
April 13, 2026 14:46
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57
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akutuva21 wants to merge 3 commits into
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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
akutuva21 wants to merge 3 commits into
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bolt-bngerror-csimulator-6233764973034024898
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@akutuva21
@akutuva21akutuva21
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Apr 9, 2026

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🧹 Bolt: Replace assert statements with structured BNGErrors
What:

Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.
Why:

To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.
Verification:

I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.
Result:

Safer error checking and logging implemented for simulation parameter setups.
PR created automatically by Jules for task 6233764973034024898 started by @akutuva21
@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
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👋 Jules, reporting for duty! I'm here to lend a hand with this pull request.
When you start a review, I'll add a 👀 emoji to each comment to let you know I've read it. I'll focus on feedback directed at me and will do my best to stay out of conversations between you and other bots or reviewers to keep the noise down.
I'll push a commit with your requested changes shortly after. Please note there might be a delay between these steps, but rest assured I'm on the job!
For more direct control, you can switch me to Reactive Mode. When this mode is on, I will only act on comments where you specifically mention me with @jules. You can find this option in the Pull Request section of your global Jules UI settings. You can always switch back!
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For security, I will only act on instructions from the user who triggered this task.
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Superseded by #94 csimulator assert->BNGError transition.
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Superseded by #94 csimulator assert->BNGError transition.
Understood. Acknowledging that this work is now obsolete and stopping work on this task.
@akutuva21
akutuva21
deleted the

bolt-bngerror-csimulator-6233764973034024898

branch
April 13, 2026 14:46
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57
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akutuva21 wants to merge 3 commits into
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bolt-bngerror-csimulator-6233764973034024898
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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
akutuva21 wants to merge 3 commits into
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bolt-bngerror-csimulator-6233764973034024898
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@akutuva21
@akutuva21akutuva21
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🧹 Bolt: Replace assert statements with structured BNGErrors
What:

Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.
Why:

To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.
Verification:

I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.
Result:

Safer error checking and logging implemented for simulation parameter setups.
PR created automatically by Jules for task 6233764973034024898 started by @akutuva21
@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
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👋 Jules, reporting for duty! I'm here to lend a hand with this pull request.
When you start a review, I'll add a 👀 emoji to each comment to let you know I've read it. I'll focus on feedback directed at me and will do my best to stay out of conversations between you and other bots or reviewers to keep the noise down.
I'll push a commit with your requested changes shortly after. Please note there might be a delay between these steps, but rest assured I'm on the job!
For more direct control, you can switch me to Reactive Mode. When this mode is on, I will only act on comments where you specifically mention me with @jules. You can find this option in the Pull Request section of your global Jules UI settings. You can always switch back!
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For security, I will only act on instructions from the user who triggered this task.
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Superseded by #94 csimulator assert->BNGError transition.
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Superseded by #94 csimulator assert->BNGError transition.
Understood. Acknowledging that this work is now obsolete and stopping work on this task.
@akutuva21
akutuva21
deleted the

bolt-bngerror-csimulator-6233764973034024898

branch
April 13, 2026 14:46
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57
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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
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🧹 Bolt: Replace assert statements with structured BNGErrors
What:

Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.
Why:

To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.
Verification:

I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.
Result:

Safer error checking and logging implemented for simulation parameter setups.
PR created automatically by Jules for task 6233764973034024898 started by @akutuva21
@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
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👋 Jules, reporting for duty! I'm here to lend a hand with this pull request.
When you start a review, I'll add a 👀 emoji to each comment to let you know I've read it. I'll focus on feedback directed at me and will do my best to stay out of conversations between you and other bots or reviewers to keep the noise down.
I'll push a commit with your requested changes shortly after. Please note there might be a delay between these steps, but rest assured I'm on the job!
For more direct control, you can switch me to Reactive Mode. When this mode is on, I will only act on comments where you specifically mention me with @jules. You can find this option in the Pull Request section of your global Jules UI settings. You can always switch back!
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For security, I will only act on instructions from the user who triggered this task.
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Superseded by #94 csimulator assert->BNGError transition.
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Superseded by #94 csimulator assert->BNGError transition.
Understood. Acknowledging that this work is now obsolete and stopping work on this task.
@akutuva21
akutuva21
deleted the

bolt-bngerror-csimulator-6233764973034024898

branch
April 13, 2026 14:46
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57
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bolt-bngerror-csimulator-6233764973034024898
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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
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🧹 Bolt: Replace assert statements with structured BNGErrors
What:

Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.
Why:

To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.
Verification:

I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.
Result:

Safer error checking and logging implemented for simulation parameter setups.
PR created automatically by Jules for task 6233764973034024898 started by @akutuva21
@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
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👋 Jules, reporting for duty! I'm here to lend a hand with this pull request.
When you start a review, I'll add a 👀 emoji to each comment to let you know I've read it. I'll focus on feedback directed at me and will do my best to stay out of conversations between you and other bots or reviewers to keep the noise down.
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Superseded by #94 csimulator assert->BNGError transition.
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Superseded by #94 csimulator assert->BNGError transition.
Understood. Acknowledging that this work is now obsolete and stopping work on this task.
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bolt-bngerror-csimulator-6233764973034024898

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April 13, 2026 14:46
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57
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bolt-bngerror-csimulator-6233764973034024898
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🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
akutuva21 wants to merge 3 commits into
mainfrom 
bolt-bngerror-csimulator-6233764973034024898
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@akutuva21
@akutuva21akutuva21
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Apr 9, 2026

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🧹 Bolt: Replace assert statements with structured BNGErrors
What:

Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.
Why:

To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.
Verification:

I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.
Result:

Safer error checking and logging implemented for simulation parameter setups.
PR created automatically by Jules for task 6233764973034024898 started by @akutuva21
@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
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👋 Jules, reporting for duty! I'm here to lend a hand with this pull request.
When you start a review, I'll add a 👀 emoji to each comment to let you know I've read it. I'll focus on feedback directed at me and will do my best to stay out of conversations between you and other bots or reviewers to keep the noise down.
I'll push a commit with your requested changes shortly after. Please note there might be a delay between these steps, but rest assured I'm on the job!
For more direct control, you can switch me to Reactive Mode. When this mode is on, I will only act on comments where you specifically mention me with @jules. You can find this option in the Pull Request section of your global Jules UI settings. You can always switch back!
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For security, I will only act on instructions from the user who triggered this task.
@akutuva21
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Apr 13, 2026

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Superseded by #94 csimulator assert->BNGError transition.
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Apr 13, 2026

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Superseded by #94 csimulator assert->BNGError transition.
Understood. Acknowledging that this work is now obsolete and stopping work on this task.
@akutuva21
akutuva21
deleted the

bolt-bngerror-csimulator-6233764973034024898

branch
April 13, 2026 14:46
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator - #57
Closed
akutuva21 wants to merge 3 commits into
mainfrom 
bolt-bngerror-csimulator-6233764973034024898
Closed
🧹 Bolt: Replace assert statements with BNGSimulatorError in csimulator#57
akutuva21 wants to merge 3 commits into
mainfrom 
bolt-bngerror-csimulator-6233764973034024898
Conversation
@akutuva21
@akutuva21akutuva21
commented
Apr 9, 2026

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🧹 Bolt: Replace assert statements with structured BNGErrors
What:

Replaced generic assert statements in bionetgen/simulator/csimulator.py with structured BNGSimulatorError (a subclass of BNGError) and standardized error logging via BNGLogger. Also added BNGSimulatorError to bionetgen.core.exc.
Why:

To transition from generic assertions to specific custom exception classes for better error handling, traceability, and logging as part of an ongoing project convention update. This prevents application crashes with uninformative AssertionErrors.
Verification:

I manually verified the error raising mechanism through mock objects, ensuring that when unequal array lengths are supplied, the code successfully raises a BNGSimulatorError and logs the message appropriately. Tests were run, and any pre-existing environment-related failures were unchanged.
Result:

Safer error checking and logging implemented for simulation parameter setups.
PR created automatically by Jules for task 6233764973034024898 started by @akutuva21
@google-labs-jules@akutuva21
refactor: replace assert statements with BNGSimulatorError in csimulator
2bd755d
Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>
@google-labs-jules
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Apr 9, 2026

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👋 Jules, reporting for duty! I'm here to lend a hand with this pull request.
When you start a review, I'll add a 👀 emoji to each comment to let you know I've read it. I'll focus on feedback directed at me and will do my best to stay out of conversations between you and other bots or reviewers to keep the noise down.
I'll push a commit with your requested changes shortly after. Please note there might be a delay between these steps, but rest assured I'm on the job!
For more direct control, you can switch me to Reactive Mode. When this mode is on, I will only act on comments where you specifically mention me with @jules. You can find this option in the Pull Request section of your global Jules UI settings. You can always switch back!
New to Jules? Learn more at jules.google/docs.
For security, I will only act on instructions from the user who triggered this task.
@akutuva21
akutuva21
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Apr 13, 2026

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Superseded by #94 csimulator assert->BNGError transition.
@google-labs-jules
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commented
Apr 13, 2026

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Superseded by #94 csimulator assert->BNGError transition.
Understood. Acknowledging that this work is now obsolete and stopping work on this task.
@akutuva21
akutuva21
deleted the

bolt-bngerror-csimulator-6233764973034024898

branch
April 13, 2026 14:46
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