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1. castgencastgenPublic

   castgen: R package with methods for estimating the number of individuals to sample from a population in order to capture a predefined percentage of diversity

   R 1

2. BinxBinxPublic

   Binx: A Rust-based CLI tool for polyploid and diploid genomic analysis

   Rust

3. Capturing_genomic_diversityCapturing_genomic_diversityPublic

   Estimate the number of individuals to sample from a population to capture genomic diversity.

   Python

4. SimpleSnekSimpleSnekPublic

   Snakemake automated workflow for GATK variant calling pipeline

   Python

5. Breeding-Insight/BIGappBreeding-Insight/BIGappPublic

   The BIG app is a user-friendly R Shiny app to analyze genomic data without needing to use command-line tools and works across different species ploidy.

   R 8 6

6. Breeding-Insight/BIGrBreeding-Insight/BIGrPublic

   This R package contains the functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data

   R 4 4