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AntigenOmics

Omics of antigens and antigen receptor repertoires. Home of the VDJdb database and immunogenetics software developed by ISALGO lab.

34 followers
Russian Federation
https://isalgo.dev
@antigenomics

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vdjdb-dbvdjdb-dbPublic
Git-based antigen specificity database storage & management.
Python 155 28
ardaardaPublic
High-throughput mapping and domain partitioning of antigen receptor sequences
Python 56 19
vdjmatchvdjmatchPublic
Matching T-cell receptor repertoires to a database of antigen specificities
Python 39 7
mhcmatchmhcmatchPublic
Ultrafast MHC binding prediction. Matching peptides and their mimics under MHC restriction
Python 1
vdjtoolsvdjtoolsPublic
Analysis of immune repertoire sequencing results
Python 145 42
tcrentcrenPublic
Predicting TCR:pMHC binding from structural data
Jupyter Notebook 27 5

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Showing 10 of 61 repositories

vdjtools Public
Analysis of immune repertoire sequencing results
antigenomics/vdjtools's past year of commit activity
Python 145GPL-3.0 42 0 1 Updated Aug 12, 2026
mirpy Public
Machine learning for Immune Repertoires
antigenomics/mirpy's past year of commit activity
Python 7GPL-3.0 4 0 0 Updated Aug 11, 2026
arda Public
High-throughput mapping and domain partitioning of antigen receptor sequences
antigenomics/arda's past year of commit activity
Python 56GPL-3.0 19 1 0 Updated Aug 11, 2026
vdjdb-web Public
An interactive browser for the VDJdb database
antigenomics/vdjdb-web's past year of commit activity
TypeScript 16AGPL-3.0 1 0 4 Updated Aug 11, 2026
tcren Public
Predicting TCR:pMHC binding from structural data
antigenomics/tcren's past year of commit activity
Jupyter Notebook 27GPL-3.0 5 0 0 Updated Aug 11, 2026
vdjmatch Public
Matching T-cell receptor repertoires to a database of antigen specificities
antigenomics/vdjmatch's past year of commit activity
Python 39GPL-3.0 7 7 0 Updated Jul 30, 2026
seqtree Public
Efficiently search and cluster highly similar short sequences
antigenomics/seqtree's past year of commit activity
Python 0GPL-3.0 0 0 0 Updated Jul 30, 2026
mhcmatch Public
Ultrafast MHC binding prediction. Matching peptides and their mimics under MHC restriction
antigenomics/mhcmatch's past year of commit activity
Python 1GPL-3.0 0 0 0 Updated Jul 18, 2026
redcea Public
⚙️ Repertoire Embedding, Denoising, Clustering and Enrichment Analysis (REDCEA)
antigenomics/redcea's past year of commit activity
Jupyter Notebook 1GPL-3.0 0 0 0 Updated Jul 8, 2026
vdjdb-motifs Public
⚙️ Motif inference for the VDJdb database
antigenomics/vdjdb-motifs's past year of commit activity
Jupyter Notebook 6 0 0 0 Updated Jul 6, 2026

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