GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

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@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

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Thanks @mapleFU . This looks ok now.

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

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We can't merge until we make sure the R CI failure is unrelated.

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

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@pitrou Seems R failed is not related. Would you mind take a look?

@mapleFU
mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

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@mapleFU@pitrou@ursabot@wgtmac
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})();
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var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

Conversation

@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@mapleFU

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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

@pitrou

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

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Thanks @mapleFU . This looks ok now.

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

@pitrou

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We can't merge until we make sure the R CI failure is unrelated.

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

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@pitrou Seems R failed is not related. Would you mind take a look?

@mapleFU
mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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Successfully merging this pull request may close these issues.

[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

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Skip to content

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

Conversation

@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@mapleFU

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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

@mapleFU

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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MemberAuthor

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

@pitrou

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

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Thanks @mapleFU . This looks ok now.

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

@pitrou

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We can't merge until we make sure the R CI failure is unrelated.

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

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@pitrou Seems R failed is not related. Would you mind take a look?

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mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

4 participants

@mapleFU@pitrou@ursabot@wgtmac
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

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@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

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Thanks @mapleFU . This looks ok now.

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

@mapleFU

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

@pitrou

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We can't merge until we make sure the R CI failure is unrelated.

@pitrou

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

@mapleFU

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@pitrou Seems R failed is not related. Would you mind take a look?

@mapleFU
mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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Successfully merging this pull request may close these issues.

[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

4 participants

@mapleFU@pitrou@ursabot@wgtmac
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

Conversation

@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@mapleFU

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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

@mapleFU

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

@pitrou

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

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Thanks @mapleFU . This looks ok now.

@pitrou

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

@mapleFU

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

@pitrou

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We can't merge until we make sure the R CI failure is unrelated.

@pitrou

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

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@pitrou Seems R failed is not related. Would you mind take a look?

@mapleFU
mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
@ursabot

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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

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@mapleFU@pitrou@ursabot@wgtmac
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

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@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

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Thanks @mapleFU . This looks ok now.

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

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We can't merge until we make sure the R CI failure is unrelated.

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

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@pitrou Seems R failed is not related. Would you mind take a look?

@mapleFU
mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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Successfully merging this pull request may close these issues.

[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

4 participants

@mapleFU@pitrou@ursabot@wgtmac
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

Conversation

@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@mapleFU

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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

@pitrou

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

@mapleFU

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

@mapleFU

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

@pitrou

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

@pitroupitrou left a comment

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Thanks @mapleFU . This looks ok now.

@pitrou

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

@mapleFU

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

@pitrou

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We can't merge until we make sure the R CI failure is unrelated.

@pitrou

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

@mapleFU

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

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@pitrou Seems R failed is not related. Would you mind take a look?

@mapleFU
mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
@ursabot

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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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Successfully merging this pull request may close these issues.

[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

4 participants

@mapleFU@pitrou@ursabot@wgtmac
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer - #35520

Merged
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe
May 15, 2023
Merged

GH-35519: [C++][Parquet] Fixing exception handling in parquet FileSerializer#35520
pitrou merged 8 commits into
apache:mainfrom
mapleFU:parquet/fixing-npe

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@mapleFU

@mapleFUmapleFU commented May 9, 2023

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Rationale for this change

Mentioned in #35519

What changes are included in this PR?

Exception handling in CheckRowsWritten

Are these changes tested?

No, I don't know how to mock it currently

Are there any user-facing changes?

no

@mapleFU
mapleFU requested a review from wjones127 as a code ownerMay 9, 2023 16:47
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@mapleFU

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@pitrou Would you mind take a look? Analyze is in #35519 (comment)

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⚠️ GitHub issue #35519has been automatically assigned in GitHub to PR creator.

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I think we should instead prevent RowGroupSerializer::Close from creating an invalid internal state. For example:

voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
auto column_writers = std::move(columns_writers_);
for (constauto writer : column_writers) {
if (writer) {
total_bytes_written_ += writer->Close();
total_compressed_bytes_written_ +=
writer->total_compressed_bytes_written();
}
}
// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

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@pitrou Good Idea! Fix as your advice

Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment threadcpp/src/parquet/file_writer.cc
const std::shared_ptr<const KeyValueMetadata>& key_value_metadata) override {
if (key_value_metadata_ == nullptr) {
key_value_metadata_ = std::move(key_value_metadata);
key_value_metadata_ = key_value_metadata;

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Good catch!

@github-actionsgithub-actionsBot added awaiting committer review Awaiting committer review and removed awaiting review Awaiting review labels May 9, 2023
Comment threadcpp/src/parquet/file_writer.cc Outdated
Comment on lines +222 to +223
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.

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Suggested change
// If ColumnWriter::Close thrown an exception, avoid
// have bad states in column_writers_.
// Avoid invalid state if ColumnWriter::Close() throws internally.

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If anything wrong happens here, should we let the FileSerializer know that it cannot accept any write any more?

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it's already closed, whether success or not, no any write can comes to RowGroupSerializer. I guess it will cause FileSerializer destruct

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This is true if the exception happens when calling FileSerializer::Close(). What if this happens when the user directly calls RowGroupWriter::Close() to close the current row group and starts a new one?

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voidClose() override {
if (!closed_) {
closed_ = true;
CheckRowsWritten();
// ...// Ensures all columns have been written
metadata_->set_num_rows(num_rows_);
metadata_->Finish(total_bytes_written_, row_group_ordinal_);
}
}

I guess it will mark closed_ first and throw exception. During stack unwind, the RowGroupSerializer will destruct. And during next time Close is called, it will do nothing

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Comment resolved. I tried to solve some CI problems here: #35527

Seems CI failed frequently these days...

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Seems CI failed frequently these days...

Unfortunately :-( Are there issues already open for these failures?

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Thanks @mapleFU . This looks ok now.

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Hmm, the R CI failure may be related as it seems to succeed on git main:
https://github.com/apache/arrow/actions/runs/4937417890/jobs/8826087049

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Yeah, I don't want to rebase this because there are still too much failed tests :-(
Just wait others idea on this patch or merge if you think it's ok

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We can't merge until we make sure the R CI failure is unrelated.

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Hmm, actually the segfault is already known:
#35391

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😭Hurt by so many failed

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[ RUN ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r
unknown file: error: SEH exception with code 0xc00000fd thrown in the test body.
[ FAILED ] TestScan/TestCsvFileFormatScan.ScanBatchSize/0Threaded16b1024r, where GetParam() = Threaded16b1024r (314 ms)

I guess this is unrelated. https://ci.appveyor.com/project/ApacheSoftwareFoundation/arrow/builds/47021836

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@pitrou Seems R failed is not related. Would you mind take a look?

@mapleFU
mapleFU requested a review from pitrouMay 15, 2023 14:11
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I'm restarting CI a last time but it looks like this is ready to go.

@pitrou
pitrou merged commit 2d76d9a into apache:mainMay 15, 2023
ArgusLi pushed a commit to Bit-Quill/arrow that referenced this pull request May 15, 2023
…ileSerializer (apache#35520)
### Rationale for this change
Mentioned in apache#35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: apache#35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
@mapleFU
mapleFU deleted the parquet/fixing-npe branch May 16, 2023 02:46
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Benchmark runs are scheduled for baseline = e2e3a9d and contender = 2d76d9a. 2d76d9a is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Finished ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Finished ⬇️0.26% ⬆️0.0%] test-mac-arm
[Finished ⬇️0.51% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.42% ⬆️0.03%] ursa-thinkcentre-m75q
Buildkite builds:
[Finished] 2d76d9a5 ec2-t3-xlarge-us-east-2
[Finished] 2d76d9a5 test-mac-arm
[Finished] 2d76d9a5 ursa-i9-9960x
[Finished] 2d76d9a5 ursa-thinkcentre-m75q
[Finished] e2e3a9df ec2-t3-xlarge-us-east-2
[Finished] e2e3a9df test-mac-arm
[Finished] e2e3a9df ursa-i9-9960x
[Finished] e2e3a9df ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java

raulcd pushed a commit that referenced this pull request May 30, 2023
…ializer (#35520)
### Rationale for this change
Mentioned in #35519
### What changes are included in this PR?
Exception handling in `CheckRowsWritten`
### Are these changes tested?
No, I don't know how to mock it currently
### Are there any user-facing changes?
no
* Closes: #35519
Authored-by: mwish <maplewish117@gmail.com>
Signed-off-by: Antoine Pitrou <antoine@python.org>
dirtysalt pushed a commit to StarRocks/starrocks that referenced this pull request Jun 20, 2023
Fixes#23606, where memory leaks are introduced by
`_chunk_writer->release()`
The modification on Arrow is to make sure
`RowGroupSerializer::column_writers_` is cleaned up even if exception
throws.
You may refer apache/arrow#35520 for more
details.
Signed-off-by: Letian Jiang <letian.jiang@outlook.com>
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[C++][Parquet] Segfault when exception handling and closing RowGroupSerializer

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@mapleFU@pitrou@ursabot@wgtmac