[BEAM-13430] Remove propdeps and replace with compileOnly

[dpcollins-google]

• Still generate provided in the output POM.
• Remove some unnecessary "provided" dependencies from examples.
• add a dependency on runners:core-java from runners:java-fn-execution which was previously implicit
• Remove usage of JacksonFactory which is deprecated, replace with GsonFactory
• Fix dependencies of sdks:java:extensions:sql and other packages with issues revealed by this change

---

Thank you for your contribution! Follow this checklist to help us incorporate your contribution quickly and easily:

• Choose reviewer(s) and mention them in a comment (R: @username).
• Format the pull request title like [BEAM-XXX] Fixes bug in ApproximateQuantiles, where you replace BEAM-XXX with the appropriate JIRA issue, if applicable. This will automatically link the pull request to the issue.
• Update CHANGES.md with noteworthy changes.
• If this contribution is large, please file an Apache Individual Contributor License Agreement.

See the Contributor Guide for more tips on how to make review process smoother.

ValidatesRunner compliance status (on master branch)

Lang	ULR	Dataflow	Flink	Samza	Spark	Twister2
Go	---					---
Java
Python	---					---
XLang						---

Examples testing status on various runners

Lang	ULR	Dataflow	Flink	Samza	Spark	Twister2
Go	---	---	---	---	---	---	---
Java	---		---	---	---	---	---
Python	---	---	---	---	---	---	---
XLang	---	---	---	---	---	---	---

Post-Commit SDK/Transform Integration Tests Status (on master branch)

Go	Java	Python

Pre-Commit Tests Status (on master branch)

---	Java	Python	Go	Website	Whitespace	Typescript
Non-portable
Portable	---			---	---	---

See .test-infra/jenkins/README for trigger phrase, status and link of all Jenkins jobs.

GitHub Actions Tests Status (on master branch)

See CI.md for more information about GitHub Actions CI.

[codecov]

Codecov Report

Merging #16308 (7afea6c) into master (c4dd8f4) will increase coverage by 37.52%.
The diff coverage is n/a.

@@ Coverage Diff @@## master #16308 +/- ##
===========================================
+ Coverage 46.15% 83.68% +37.52% 
===========================================
Files 197 447 +250 Lines 19522 61715 +42193 ===========================================
+ Hits 9011 51645 +42634 - Misses 9540 10070 +530 + Partials 971 0 -971 

Impacted Files	Coverage Δ
sdks/go/pkg/beam/util/shimx/generate.go
sdks/go/pkg/beam/core/graph/coder/registry.go
sdks/go/pkg/beam/core/runtime/harness/statemgr.go
sdks/go/pkg/beam/core/metrics/store.go
sdks/go/pkg/beam/transforms/stats/count.go
sdks/go/pkg/beam/io/textio/textio.go
sdks/go/pkg/beam/io/filesystem/memfs/memory.go
sdks/go/pkg/beam/internal/errors/errors.go
sdks/go/pkg/beam/core/funcx/fn.go
sdks/go/pkg/beam/core/runtime/exec/status.go
... and 634 more

---

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update c4dd8f4...7afea6c. Read the comment docs.

[TheNeuralBit]

retest this please

[TheNeuralBit]

retest this please

[dpcollins-google]

retest this please

[TheNeuralBit]

retest this please

[TheNeuralBit]

Change to SQL test for BEAM-13506 LGTM

[TheNeuralBit]

LGTM

Noting here that @dpcollins-google locally verified that generated poms still include provided scope where necessary.

[TheNeuralBit]

Python precommit failure looks like a flake

[lukecwik]

What was the reasoning behind going with compileOnly instead of creating a new provided configuration?

Note there were a couple of compileOnly dependencies before this change that now will be marked as provided such as all the compileOnlyAnnotations within BeamModulePlugin.groovy.

[aaltay]

What was the reasoning behind going with compileOnly instead of creating a new provided configuration?

Note there were a couple of compileOnly dependencies before this change that now will be marked as provided such as all the compileOnlyAnnotations within BeamModulePlugin.groovy.

@lukecwik - should this be a jira tracked as part of https://issues.apache.org/jira/browse/BEAM-13430 ?