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HBASE-26969:Eliminate MOB renames when SFT is enabled - #4418

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HBASE-26969:Eliminate MOB renames when SFT is enabled#4418
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Get rid of renames in the MOB compaction and flush. Also refactor the
MOB cleaner to be compatible with FileBased StoreFileTracker

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Possible null pointer dereference of regionDirs in org.apache.hadoop.hbase.mob.MobFileCleanerChore.cleanupObsoleteMobFiles(Configuration, TableName) Dereferenced at MobFileCleanerChore.java:regionDirs in org.apache.hadoop.hbase.mob.MobFileCleanerChore.cleanupObsoleteMobFiles(Configuration, TableName) Dereferenced at MobFileCleanerChore.java:[line 174]
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💔 -1 overall

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@wchevreuilwchevreuil left a comment

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Have gone through a first review round, got a few nits, plus some clarification questions on some of the changes.

}

if (this.rsMobFileCleanerChore != null) {
choreService.scheduleChore(rsMobFileCleanerChore);

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So now we will always have this running at RSes, plus the old MobFileCleanerChore running on Master?

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The new MobFileCleanerChore is not the same as the old one. The main cleanup is done by the RSMobFileCleanerChore running on each RS, cleaning up mob files created by regions hosted on that RS. This should cover most of the usecases.
But I still had to run a restricted version of the old MobFileCleanerChore to clean up after mobs made by now-archived regions, because to make sure those are not referenced anymore every hfile have to be checked.

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But I still had to run a restricted version of the old MobFileCleanerChore to clean up after mobs made by now-archived regions, because to make sure those are not referenced anymore every hfile have to be checked.

So, MobFileCleanerChore seems to be checking all existing hfiles. Wouldn't that supersede the RSMobFileCleanerChore work? And what if both run at the same time, could both try to archive a same subset of files?

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Let me clarify the differences between the 2 cleaners.

RSMobFileCleanerChore:

  • runs on RS to have access to currently written files and active storefile list
  • can only archive mob files created by regions hosted on the current RS
  • only reads hfiles belonging to regions hosted by the current RS when looking for references
    This allow it to do the majority of the cleanup necessary as efficiently as possible

MobFileCleanerChore:

  • runs on Master
  • can only archive mob files created by archived regions (regions no longer existing in the /data folder). Thanks to this these mob files can no longer be "currently written" so we do not need the data only available on the RS
  • reads every single hfile in /data with a mob enabled CF. This is necessary, because this is the only way if any of these mobs has active references

So yes, there is an overlap, the same hfiles could be read by both cleansers but the a mob file could be archived with either one of them. The cleaner on the master is wasteful and not especially elegant, but thanks to the lack of centralized mob tracking we do not have a better way of collecting the references.

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can only archive mob files created by archived regions (regions no longer existing in the /data folder). Thanks to this these mob files can no longer be "currently written" so we do not need the data only available on the RS

Got it.

The cleaner on the master is wasteful and not especially elegant, but thanks to the lack of centralized mob tracking we do not have a better way of collecting the references.

Can we trust META here to list SPLIT/MERGE parents? We could then iterate through these list and check for mob files for these regions. Just brainstorming here, ain't sure if the region dir is left lingering in the FS when SPLIT/MERGE parents are cleared from META (in which case, would make such alternative unfeasible).

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💔 -1 overall

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}
//collecting files, MOB included currently being written
regionMobs.addAll(
store.getStoreFilesBeingWritten().stream().map(path -> path.getName())

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I guess this here is because we need to add all currently being written files because we have no means to know if those have mob refs or not.

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It is here because mob compaction/flush runs as part of non-mob store compaction/flush that created it. And because of how these work the most convenient way to keep track of compacting/flushing mob files was to add them to the list of compacting/flushing non-mob files. So this list has everything. But only part of the list is actually interesting for us at any given time.

Comment on lines +170 to +173
LOG.debug("Found: {} active mob refs for table={}",
referencedMOBs.values().stream().map(inner -> inner.values())
.flatMap(lists -> lists.stream()).mapToInt(lists -> lists.size()).sum(),
htd.getTableName().getNameAsString());

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nit: check if debug is enabled, otherwise we'll always be computing the debug param.

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That is a very nice catch, thanks!

Comment on lines +174 to +180
referencedMOBs.values().stream().forEach(innerMap -> innerMap.values().stream()
.forEach(mobFileList -> mobFileList.stream().forEach(LOG::trace)));

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nit: same as above.

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Same as above :)

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💔 -1 overall

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_ Patch Compile Tests _
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Have been going back and forth with @BukrosSzabolcs on this, discussing what would be alternatives for a more efficient solution. Unfortunately, our conclusion is that unless we can implement some sort of "global" registry of referenced mob files, there's not much left we can do. Such refactoring would be more suitable under a whole MOB redesign.

So for now, I think we are good to go with this PR, which main objective is to avoid usage of temp dirs/renames when FILE SFT is enabled, making MOB behaviour aligned with the conventional regions behaviour.

Regarding the latest UT failures, these should actually be addressed by HBASE-27017 commit. I'm good to approve this once we rebase it and get a green UT run.

Thanks for being super patient, @BukrosSzabolcs !

Get rid of renames in the MOB compaction and flush. Also refactor the
MOB cleaner to be compatible with FileBased StoreFileTracker
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+0 🆗reexec1m 8sDocker mode activated.
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+1 💚dupname0m 0sNo case conflicting files found.
+1 💚hbaseanti0m 0sPatch does not have any anti-patterns.
+1 💚@author0m 0sThe patch does not contain any @author tags.
_ master Compile Tests _
+1 💚mvninstall2m 59smaster passed
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_ Patch Compile Tests _
-1 ❌mvninstall1m 43sroot in the patch failed.
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-0 ⚠️checkstyle0m 29shbase-server: The patch generated 13 new + 19 unchanged - 0 fixed = 32 total (was 19)
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_ Other Tests _
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GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsdupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
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_ Patch Compile Tests _
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_ Other Tests _
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266m 19s
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GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
unameLinux 1b542f831140 5.4.0-1071-aws #76~18.04.1-Ubuntu SMP Mon Mar 28 17:49:57 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
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GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
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JIRA IssueHBASE-26969
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GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
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_ Patch Compile Tests _
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GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
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_ Patch Compile Tests _
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GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsdupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
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versionsgit=2.17.1 maven=3.6.3 spotbugs=4.2.2
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💔 -1 overall

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+0 🆗reexec1m 8sDocker mode activated.
-0 ⚠️yetus0m 4sUnprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚mvninstall2m 30smaster passed
+1 💚compile0m 39smaster passed
+1 💚shadedjars3m 43sbranch has no errors when building our shaded downstream artifacts.
+1 💚javadoc0m 26smaster passed
_ Patch Compile Tests _
+1 💚mvninstall2m 9sthe patch passed
+1 💚compile0m 39sthe patch passed
+1 💚javac0m 39sthe patch passed
+1 💚shadedjars3m 41spatch has no errors when building our shaded downstream artifacts.
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_ Other Tests _
-1 ❌unit205m 3shbase-server in the patch failed.
221m 49s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
unameLinux 5cb8b6ef1102 5.4.0-90-generic #101-Ubuntu SMP Fri Oct 15 20:00:55 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
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unithttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/artifact/yetus-jdk8-hadoop3-check/output/patch-unit-hbase-server.txt
Test Resultshttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/testReport/
Max. process+thread count2713 (vs. ulimit of 30000)
modulesC: hbase-server U: hbase-server
Console outputhttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/console
versionsgit=2.17.1 maven=3.6.3
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💔 -1 overall

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+0 🆗reexec1m 8sDocker mode activated.
-0 ⚠️yetus0m 4sUnprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚mvninstall4m 9smaster passed
+1 💚compile0m 57smaster passed
+1 💚shadedjars4m 52sbranch has no errors when building our shaded downstream artifacts.
+1 💚javadoc0m 37smaster passed
_ Patch Compile Tests _
+1 💚mvninstall3m 10sthe patch passed
+1 💚compile0m 49sthe patch passed
+1 💚javac0m 49sthe patch passed
+1 💚shadedjars4m 14spatch has no errors when building our shaded downstream artifacts.
+1 💚javadoc0m 30sthe patch passed
_ Other Tests _
-1 ❌unit211m 20shbase-server in the patch failed.
233m 26s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
unameLinux 99d7c52f7e32 5.4.0-1043-aws #45~18.04.1-Ubuntu SMP Fri Apr 9 23:32:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
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unithttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/artifact/yetus-jdk11-hadoop3-check/output/patch-unit-hbase-server.txt
Test Resultshttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/testReport/
Max. process+thread count2484 (vs. ulimit of 30000)
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Console outputhttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/6/console
versionsgit=2.17.1 maven=3.6.3
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@BukrosSzabolcs

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recheck

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🎊 +1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec3m 30sDocker mode activated.
_ Prechecks _
+1 💚dupname0m 0sNo case conflicting files found.
+1 💚hbaseanti0m 0sPatch does not have any anti-patterns.
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_ master Compile Tests _
+1 💚mvninstall2m 25smaster passed
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_ Patch Compile Tests _
+1 💚mvninstall2m 4sthe patch passed
+1 💚compile2m 8sthe patch passed
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-0 ⚠️checkstyle0m 28shbase-server: The patch generated 2 new + 19 unchanged - 0 fixed = 21 total (was 19)
+1 💚whitespace0m 0sThe patch has no whitespace issues.
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+1 💚spotless0m 39spatch has no errors when running spotless:check.
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_ Other Tests _
+1 💚asflicense0m 9sThe patch does not generate ASF License warnings.
34m 12s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsdupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile
unameLinux ba56bbd34696 5.4.0-1068-aws #72~18.04.1-Ubuntu SMP Thu Mar 3 08:49:49 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
Build toolmaven
Personalitydev-support/hbase-personality.sh
git revisionmaster / 5e5d18b
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checkstylehttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/artifact/yetus-general-check/output/diff-checkstyle-hbase-server.txt
Max. process+thread count60 (vs. ulimit of 30000)
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Console outputhttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/console
versionsgit=2.17.1 maven=3.6.3 spotbugs=4.2.2
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec1m 53sDocker mode activated.
-0 ⚠️yetus0m 3sUnprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚mvninstall3m 3smaster passed
+1 💚compile0m 44smaster passed
+1 💚shadedjars4m 12sbranch has no errors when building our shaded downstream artifacts.
+1 💚javadoc0m 32smaster passed
_ Patch Compile Tests _
+1 💚mvninstall2m 49sthe patch passed
+1 💚compile0m 53sthe patch passed
+1 💚javac0m 53sthe patch passed
+1 💚shadedjars4m 49spatch has no errors when building our shaded downstream artifacts.
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_ Other Tests _
-1 ❌unit234m 41shbase-server in the patch failed.
255m 50s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
unameLinux 0cc3efe8b6e1 5.4.0-90-generic #101-Ubuntu SMP Fri Oct 15 20:00:55 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build toolmaven
Personalitydev-support/hbase-personality.sh
git revisionmaster / 5e5d18b
Default JavaAdoptOpenJDK-1.8.0_282-b08
unithttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/artifact/yetus-jdk8-hadoop3-check/output/patch-unit-hbase-server.txt
Test Resultshttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/testReport/
Max. process+thread count2367 (vs. ulimit of 30000)
modulesC: hbase-server U: hbase-server
Console outputhttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/console
versionsgit=2.17.1 maven=3.6.3
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🎊 +1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec1m 4sDocker mode activated.
-0 ⚠️yetus0m 3sUnprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
_ Prechecks _
_ master Compile Tests _
+1 💚mvninstall3m 31smaster passed
+1 💚compile1m 11smaster passed
+1 💚shadedjars4m 47sbranch has no errors when building our shaded downstream artifacts.
+1 💚javadoc0m 31smaster passed
_ Patch Compile Tests _
+1 💚mvninstall3m 8sthe patch passed
+1 💚compile0m 58sthe patch passed
+1 💚javac0m 58sthe patch passed
+1 💚shadedjars4m 19spatch has no errors when building our shaded downstream artifacts.
+1 💚javadoc0m 25sthe patch passed
_ Other Tests _
+1 💚unit234m 22shbase-server in the patch passed.
257m 33s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR#4418
JIRA IssueHBASE-26969
Optional Testsjavac javadoc unit shadedjars compile
unameLinux 1c130ca48295 5.4.0-1043-aws #45~18.04.1-Ubuntu SMP Fri Apr 9 23:32:25 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Build toolmaven
Personalitydev-support/hbase-personality.sh
git revisionmaster / 5e5d18b
Default JavaAdoptOpenJDK-11.0.10+9
Test Resultshttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/testReport/
Max. process+thread count2674 (vs. ulimit of 30000)
modulesC: hbase-server U: hbase-server
Console outputhttps://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-4418/7/console
versionsgit=2.17.1 maven=3.6.3
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@wchevreuil

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The reported test failures seems unrelated.

@wchevreuil
wchevreuil marked this pull request as ready for review June 21, 2022 09:17
@wchevreuil
wchevreuil merged commit 5cf728d into apache:masterJun 21, 2022
BukrosSzabolcs added a commit to BukrosSzabolcs/hbase that referenced this pull request Aug 17, 2022
HBASE-25970:MOB data loss - incorrect concatenation of MOB_FILE_REFS
Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>
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@BukrosSzabolcs@Apache-HBase@wchevreuil