[SPARK-16469] enhanced simulate multiply

[uzadude]

What changes were proposed in this pull request?

We have a use case of multiplying very big sparse matrices. we have about 1000x1000 distributed block matrices multiplication and the simulate multiply goes like O(n^4) (n being 1000). it takes about 1.5 hours. We modified it slightly with classical hashmap and now run in about 30 seconds O(n^2).

How was this patch tested?

We have added a performance test and verified the reduced time.

[srowen]

Please read https://cwiki.apache.org/confluence/display/SPARK/Contributing+to+Spark

[uzadude]

Hi srowen,
I have read the "how to contribute" wiki. I thought that it is too small of enhancement to open a jira for it and it passes the tests.

[srowen]

I don't think this is trivial. You also need to explain the change in more detail.

[uzadude]

Sure.
The current method for multiplying distributed block matrices starts by deciding which block should be shuffled to which partition to do the actual multiplications. This stage is implemented in the function called "simulateMultiply" in BlockMatrix class.
Specifically, it iterates over all the blocks in the left matrix (lets assume there are NxN blocks) and for each block iterates over all the blocks in the right matrix (also NxN) to check for potential matches. This process if obviously in the order of O(N^4). The nature of the inner iteration could be enhanced trivially. It currently filters on pre-determend condition:

valleftDestinations= leftMatrix.map { case (rowIndex, colIndex) =>valrightCounterparts= rightMatrix.filter(_._1 == colIndex)
valpartitions= rightCounterparts.map(b => partitioner.getPartition((rowIndex, b._2)))
((rowIndex, colIndex), partitions.toSet)
}.toMap

more clearly this part:

valrightCounterparts= rightMatrix.filter(_._1 == colIndex)

So if we were to cache this check for example in a HashMap:

valrightCounterpartsHelper= rightMatrix.groupBy(_._1).map { case (rowIndex, arr) =>
(rowIndex, arr.map(b => b._2))
}

We can omit the inner filter and just use it:

valleftDestinations= leftMatrix.map { case (rowIndex, colIndex) =>
((rowIndex, colIndex), rightCounterpartsHelper.getOrElse(colIndex, Array()).map(b =>
partitioner.getPartition((rowIndex, b))).toSet)
}.toMap

And to put it al toghether:

valrightCounterpartsHelper= rightMatrix.groupBy(_._1).map { case (rowIndex, arr) =>
(rowIndex, arr.map(b => b._2))
}
valleftDestinations= leftMatrix.map { case (rowIndex, colIndex) =>
((rowIndex, colIndex), rightCounterpartsHelper.getOrElse(colIndex, Array()).map(b =>
partitioner.getPartition((rowIndex, b))).toSet)
}.toMap

And the same trick also for the rightDestinations.
As I mentioned above we encountered this while trying to multiply big sparse matrices and it got stuck on the driver for a very long time (~1.5 hours) and we had to do it iteratively so the all process took many hours. After the fix this part reduced to a few seconds.

[srowen]

Nit: could this just be rightMatrix.groupBy(_._1).mapValues(_.map(_._2))

[srowen]

It does make sense. Please make a JIRA and connect this though.

[uzadude]

I have opened SPARK-16469.

[srowen]

LGTM but CC @brkyvz

[brkyvz]

nit: for readability could you assign this to a variable instead of inlining it?
In addition, for multi-line expressions

.map { b =>
blah
}

is more preferred

[brkyvz]

LGTM, just a minor nit! Thanks for this PR

[uzadude]

Have done the requested nit changes.

[srowen]

Jenkins retest this please

[SparkQA]

Test build #62234 has finished for PR 14068 at commit 3ae9ac7.

• This patch passes all tests.
• This patch merges cleanly.
• This patch adds no public classes.

[akaltsikis]

@uzadude hey, i am looking to multiply VERY LARGE AND VERY SPARSE matrixes using Spark. I would love some discussion over it. Can you give me a way to contact you?

[uzadude]

Sure, what size are you talking about? we had to some internal code fixes to do that. right now the support for sparse matrices is pretty poor - mainly because Breeze doesn't support it.
I'm not sure how can I privately send you my contact details here. could you send me a mean of communication and I'll contact you?

[akaltsikis]

@uzadude Looking forward to make it work for matrixes bigger than 1Mx1M and sparsity of 0.001-0.002.
It means that i need to use distributed linear algebra methods. I am using a CoordinateMatrix format for my matrices right now but it seems that it can not multiply the matrix by himself (square it ) fast enough. I will be happy if you can send me an email with the same username that i have at gmail dot com.