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ariaixian/README.md

Maria

Molecular biologist exploring protein engineering.

TUM, LMU Munich, BOKU Vienna, Newcastle, RUG alumna.

Selected work

  • HPC Protein Partner Screening — a privacy-aware workflow for prioritizing possible protein partners with Boltz, Slurm GPU arrays, auditable recovery, and transparent structural ranking.
  • Population Structure Workbench — ploidy-aware SNP diagnostics that make quality control, PCA limitations, and cluster-stability assumptions explicit.
  • FASTA Research Toolkit — tested command-line tools for reproducible, privacy-conscious sequence preparation, local alignment, and tree construction.
  • CitationTool — a local-first evidence-retrieval tool that links candidate supporting passages back to their pages and DOI metadata.
  • Breast Cancer Proteomics and Demographics — an exploratory CPTAC analysis that documents negative results, statistical limitations, and reproducibility decisions alongside the findings.
  • PCR Primer Workbench — a tested browser workbench for PCR end-primer design with visible sequence checks, calculations, and limitations.

Current direction

I am developing a public research portfolio around protein engineering and computational biology: well-scoped experiments, literature-grounded questions, and tools that expose their assumptions instead of hiding them behind an interface. My current priority is to deepen the projects above through validation, benchmarks, worked examples, and sustained maintenance rather than adding volume.

Popular repositories Loading

  1. ects-grade-calculator ects-grade-calculatorPublic

    A browser-based weighted grade calculator for ECTS coursework.

    JavaScript

  2. pcr-primer-workbench pcr-primer-workbenchPublic

    A tested browser workbench for PCR end-primer design and sequence inspection.

    JavaScript

  3. eisenhower-calendar-planner eisenhower-calendar-plannerPublic

    Eisenhower Matrix planner with task prioritization, schedule generation, and optional Google Calendar integration.

    Python

  4. epure-weight-journal epure-weight-journalPublic

    A minimalist, browser-based weight journal and progress tracker.

    JavaScript

  5. ariaixian ariaixianPublic

    Protein engineering, computational biology, and reproducible scientific tools.

  6. breast-cancer-proteomics-demographics breast-cancer-proteomics-demographicsPublic

    Exploratory CPTAC breast cancer proteomics analysis of tumor state, age, and self-reported race

    Jupyter Notebook