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1. IGVF-Cell-Painting-Scripts IGVF-Cell-Painting-ScriptsPublic

   useful scripts for cell painting data analysis

   R 1 1

2. Symbiont_genomeAssembly Symbiont_genomeAssemblyPublic

   My scripts that utilize nextflow for automating and parallelizing symbiont genome assemblies.

   Nextflow

3. genefilter genefilterPublic

   An R script that parses through a .gbk file and returns a .csv file of the list of genes that are present

   R

4. blast_summaries blast_summariesPublic

   a few optional functions for getting the appropariate nodes from blast summaries

   Python

5. remove_Origin remove_OriginPublic

   a short bash script to remove Origin sequences from gbk files, which can clash with the R .gbk file parser, parseGenBank()

   Shell

6. editing_gbkFiles editing_gbkFilesPublic

   to edit gbk files after pseudofinder exports .gff file

   Shell