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@3D-fossils-Haag

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aubricot/README.md

Hi! 👋

I'm Katie.

An integrative biologist using computational approaches to maximize the utility of collections-based research and effectively communicate results to the public using data visualization, microscopy, and educational technology.

aubricot's Github statsOpen source contribution stats

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  1. 3D-fossils-Haag/nsm3D-fossils-Haag/nsmPublic

    Forked from gattia/nsm

    Neural shape model (nsm) library - modified to work with modern and fossil lizard (Squamate) vertebrae

    Jupyter Notebook 8 2

  2. EOL/computer-vision-with-EOL-imagesEOL/computer-vision-with-EOL-imagesPublic

    Testing different computer vision methods (object detection, image classification) to do customized, large-scale image processing for Encylopedia of Life images.

    Jupyter Notebook 9 4

  3. agporto/SlicerMorphoWeaveagporto/SlicerMorphoWeavePublic

    MorphoWeave: A 3D Slicer extension for anatomical atlas construction, statistical shape modeling, biology-guided deformable registration, and automated landmark transfer.

    Python 6 3

  4. Cacao_3D_gmmCacao_3D_gmmPublic

    Files used for 3D gmm analysis of cacao flowers in Wolcott et al. 2023, APPS

    R 1 1

  5. CV_for_flower_CTCV_for_flower_CTPublic

    Computer vision for micro-CT datasets of flowers

    Jupyter Notebook 1

  6. nrrd2tiffnrrd2tiffPublic

    Convert an .nrrd micro-CT XRM dataset to a .tiff stack for upload to MorphoSource

    Jupyter Notebook