Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all \u003cpre\u003e\u003ccode\u003e blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks"); } } catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); } })(); (function(){ try { var __m = "github.com"; var __re = new RegExp('^' + "github\\.com" + '
Skip to content
Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content
Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length \u003e 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content
Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content
Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content
Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content
Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content
Merged
21 changes: 13 additions & 8 deletions src/sagemaker/amazon/amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -159,7 +159,7 @@ def fit(self, records, mini_batch_size=None, wait=True, logs=True, job_name=None
if wait:
self.latest_training_job.wait(logs=logs)

def record_set(self, train, labels=None, channel="train"):
def record_set(self, train, labels=None, channel="train", encrypt=False):
"""Build a :class:`~RecordSet` from a numpy :class:`~ndarray` matrix and label vector.

For the 2D ``ndarray`` ``train``, each row is converted to a :class:`~Record` object.
Expand All@@ -177,8 +177,10 @@ def record_set(self, train, labels=None, channel="train"):
Args:
train (numpy.ndarray): A 2D numpy array of training data.
labels (numpy.ndarray): A 1D numpy array of labels. Its length must be equal to the
number of rows in ``train``.
number of rows in ``train``.
channel (str): The SageMaker TrainingJob channel this RecordSet should be assigned to.
encrypt (bool): Specifies whether the objects uploaded to S3 are encrypted on the
server side using AES-256 (default: ``False``).
Returns:
RecordSet: A RecordSet referencing the encoded, uploading training and label data.
"""
Expand All@@ -188,7 +190,8 @@ def record_set(self, train, labels=None, channel="train"):
key_prefix = key_prefix + '{}-{}/'.format(type(self).__name__, sagemaker_timestamp())
key_prefix = key_prefix.lstrip('/')
logger.debug('Uploading to bucket {} and key_prefix {}'.format(bucket, key_prefix))
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket, key_prefix, train, labels)
manifest_s3_file = upload_numpy_to_s3_shards(self.train_instance_count, s3, bucket,
key_prefix, train, labels, encrypt)
logger.debug("Created manifest file {}".format(manifest_s3_file))
return RecordSet(manifest_s3_file, num_records=train.shape[0], feature_dim=train.shape[1], channel=channel)

Expand DownExpand Up@@ -239,15 +242,17 @@ def _build_shards(num_shards, array):
return shards


def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` s3 objects,
stored in "s3://``bucket``/``key_prefix``/"."""
def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=None, encrypt=False):
"""Upload the training ``array`` and ``labels`` arrays to ``num_shards`` S3 objects,
stored in "s3://``bucket``/``key_prefix``/". Optionally ``encrypt`` the S3 objects using
AES-256."""
shards = _build_shards(num_shards, array)
if labels is not None:
label_shards = _build_shards(num_shards, labels)
uploaded_files = []
if key_prefix[-1] != '/':
key_prefix = key_prefix + '/'
extra_put_kwargs = {'ServerSideEncryption': 'AES256'} if encrypt else {}
try:
for shard_index, shard in enumerate(shards):
with tempfile.TemporaryFile() as file:
Expand All@@ -260,12 +265,12 @@ def upload_numpy_to_s3_shards(num_shards, s3, bucket, key_prefix, array, labels=
file_name = "matrix_{}.pbr".format(shard_index_string)
key = key_prefix + file_name
logger.debug("Creating object {} in bucket {}".format(key, bucket))
s3.Object(bucket, key).put(Body=file)
s3.Object(bucket, key).put(Body=file, **extra_put_kwargs)
uploaded_files.append(file_name)
manifest_key = key_prefix + ".amazon.manifest"
manifest_str = json.dumps(
[{'prefix': 's3://{}/{}'.format(bucket, key_prefix)}] + uploaded_files)
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'))
s3.Object(bucket, manifest_key).put(Body=manifest_str.encode('utf-8'), **extra_put_kwargs)
return "s3://{}/{}".format(bucket, manifest_key)
except Exception as ex: # pylint: disable=broad-except
try:
Expand Down
42 changes: 42 additions & 0 deletions tests/integ/test_record_set.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,42 @@
# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"). You
# may not use this file except in compliance with the License. A copy of
# the License is located at
#
# http://aws.amazon.com/apache2.0/
#
# or in the "license" file accompanying this file. This file is
# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
# ANY KIND, either express or implied. See the License for the specific
# language governing permissions and limitations under the License.
from __future__ import absolute_import

import gzip
import os
import pickle
import sys

from six.moves.urllib.parse import urlparse

from sagemaker import KMeans
from tests.integ import DATA_DIR


def test_record_set(sagemaker_session):
"""Test the method ``AmazonAlgorithmEstimatorBase.record_set``.

In particular, test that the objects uploaded to the S3 bucket are encrypted.
"""
data_path = os.path.join(DATA_DIR, 'one_p_mnist', 'mnist.pkl.gz')
pickle_args = {} if sys.version_info.major == 2 else {'encoding': 'latin1'}
with gzip.open(data_path, 'rb') as file_object:
train_set, _, _ = pickle.load(file_object, **pickle_args)
kmeans = KMeans(role='SageMakerRole', train_instance_count=1,
train_instance_type='ml.c4.xlarge',
k=10, sagemaker_session=sagemaker_session)
record_set = kmeans.record_set(train_set[0][:100], encrypt=True)
parsed_url = urlparse(record_set.s3_data)
s3_client = sagemaker_session.boto_session.client('s3')
head = s3_client.head_object(Bucket=parsed_url.netloc, Key=parsed_url.path.lstrip('/'))
assert head['ServerSideEncryption'] == 'AES256'
32 changes: 30 additions & 2 deletions tests/unit/test_amazon_estimator.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -14,7 +14,7 @@

import numpy as np
import pytest
from mock import Mock, patch, call
from mock import ANY, Mock, patch, call

# Use PCA as a test implementation of AmazonAlgorithmEstimator
from sagemaker.amazon.pca import PCA
Expand DownExpand Up@@ -143,6 +143,22 @@ def test_prepare_for_training_list_no_train_channel(sagemaker_session):
assert 'Must provide train channel.' in str(ex)


def test_prepare_for_training_encrypt(sagemaker_session):
pca = PCA(num_components=55, sagemaker_session=sagemaker_session, **COMMON_ARGS)

train = [[1.0, 2.0, 3.0], [4.0, 5.0, 6.0], [7.0, 8.0, 8.0], [44.0, 55.0, 66.0]]
labels = [99, 85, 87, 2]
with patch('sagemaker.amazon.amazon_estimator.upload_numpy_to_s3_shards',
return_value='manfiest_file') as mock_upload:
pca.record_set(np.array(train), np.array(labels))
pca.record_set(np.array(train), np.array(labels), encrypt=True)

def make_upload_call(encrypt):
return call(ANY, ANY, ANY, ANY, ANY, ANY, encrypt)

mock_upload.assert_has_calls([make_upload_call(False), make_upload_call(True)])


@patch('time.strftime', return_value=TIMESTAMP)
def test_fit_ndarray(time, sagemaker_session):
mock_s3 = Mock()
Expand DownExpand Up@@ -185,9 +201,21 @@ def test_upload_numpy_to_s3_shards():
mock_s3 = Mock()
mock_object = Mock()
mock_s3.Object = Mock(return_value=mock_object)
mock_put = mock_s3.Object.return_value.put
array = np.array([[j for j in range(10)] for i in range(10)])
labels = np.array([i for i in range(10)])
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
num_shards = 3
num_objects = num_shards + 1 # Account for the manifest file.

def make_all_put_calls(**kwargs):
return [call(Body=ANY, **kwargs) for i in range(num_objects)]

upload_numpy_to_s3_shards(num_shards, mock_s3, BUCKET_NAME, "key-prefix", array, labels)
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_0.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_1.pbr')])
mock_s3.Object.assert_has_calls([call(BUCKET_NAME, 'key-prefix/matrix_2.pbr')])
mock_put.assert_has_calls(make_all_put_calls())

mock_put.reset()
upload_numpy_to_s3_shards(3, mock_s3, BUCKET_NAME, "key-prefix", array, labels, encrypt=True)
mock_put.assert_has_calls(make_all_put_calls(ServerSideEncryption='AES256'))