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  1. SKA_phylogenySKA_phylogenyPublic

    A Nextflow pipeline to generate a phylogenetic tree from SKA alignment

    Nextflow

  2. hDNA_removal_and_mapping_statshDNA_removal_and_mapping_statsPublic

    A pipeline to remove human DNA from long-read metagenomes and extract microbial reads.

    Nextflow 1

  3. strainberrystrainberryPublic

    Nextflow Pipeline for Strain Resolution from Long Reads

    Nextflow 1

  4. ONT-PipelineONT-PipelinePublic

    A Nextflow Assembly Pipeline for Downstream Analysis of long reads (ONT) - Genome Assembly .

    Nextflow 3

  5. bactmapbactmapPublic

    Forked from nf-core/bactmap

    A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

    Nextflow