Bailey Lab

A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.

Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

A suite of computational tools used for molecular inversion probe design, data processing, and analysis.

Coverage Optimizing and Accurate Toolkit for selective whole genome amplification (sWGA)

Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results

C++ library with an aligner to test different compiler speeds with different optimizations

repo for a manuscript describing msmt longitudinal data from 2021-2023

when demultiplexing fails, we need the ability to figure out which sample barcodes were present and in what abundances. This allows us to figure out if the 'wrong' barcodes were applied to the samples or if the barcoding failed.

uses Nick Hathaway's variantCallOnSeqAndProtein script to call variants on vcf files and generate prevalences and amino acid calls