BarakCohenLab

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1. CRX-Active-Learning CRX-Active-LearningPublic

   Deep learning model for the regulatory grammar of CRX-dependent enhancers and silencers and code to reproduce analyses related to the manuscript

   Jupyter Notebook 5

2. CRX-Information-Content CRX-Information-ContentPublic

   Code for processing and analyzing massively parallel reporter assay data and computing information content of cis-regulatory sequences.

   Jupyter Notebook 4 1

3. castools castoolsPublic

   Code accompanying effect of genomic and cellular environments on gene expression noise

   Jupyter Notebook 3 1

4. preimage preimagePublic

   Active learning code for designing synthetic cis-regulatory sequences

   Python 1

5. scMPRA scMPRAPublic

   Python 1 2

6. crx-dms-manuscript crx-dms-manuscriptPublic

   Code for data analysis relevant to CRX DMS project

   Jupyter Notebook 1