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18 changes: 17 additions & 1 deletion .github/workflows/pr_check.yml
Original file line numberDiff line numberDiff line change
Expand Up@@ -35,10 +35,26 @@ jobs:
# that --no-build-isolation works (avoids a redundant isolated env).
pip install "meson-python" "meson" "cython" "numpy"

- name: Install runtime dependencies (excluding wxpython)
run: |
# pymecompress must be built with --no-build-isolation to see the already-installed numpy.
pip install --no-build-isolation pymecompress
# Read remaining deps from pyproject.toml; skip wxpython (requires a display)
# and pymecompress.
python - <<'EOF'
import tomllib, subprocess, sys
with open('pyproject.toml', 'rb') as f:
deps = tomllib.load(f)['project']['dependencies']
skip = {'wxpython', 'pymecompress'}
deps = [d for d in deps if not any(d.lower().startswith(s) for s in skip)]
subprocess.check_call([sys.executable, '-m', 'pip', 'install'] + deps)
EOF

- name: Build and install package
run: |
# --no-build-isolation reuses the build deps installed above.
pip install --no-build-isolation .
# --no-deps avoids pip trying to install wxpython at this stage.
pip install --no-build-isolation --no-deps .

- name: Install test dependencies
run: |
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80 changes: 40 additions & 40 deletions PYME/Acquire/meson.build
Original file line numberDiff line numberDiff line change
Expand Up@@ -157,45 +157,45 @@ py_sources = files(
py.install_sources(py_sources, subdir:'PYME/Acquire/htsms')

scripts_files = files(
'scripts/init.py',
'scripts/init_N1_Ti_Exeter_ZIx.py',
'scripts/init_N2_Ti_Zyla_lasers.py',
'scripts/init_Neo.py',
'scripts/init_NeoSim.py',
'scripts/init_TIRF.py',
'scripts/init_TIRF_Neo.py',
'scripts/init_TIRF_NeoO.py',
'scripts/init_TIRF_onecam.py',
'scripts/init_Ti.py',
'scripts/init_UOA_n.py',
'scripts/init_UOA_n2.py',
'scripts/init_Y1.py',
'scripts/init_Zyla.py',
'scripts/init_drift_tracking.py',
'scripts/init_emccd_basic.py',
'scripts/init_htsms.py',
'scripts/init_htsms_focus_lock.py',
'scripts/init_micrpi.py',
'scripts/init_orca.py',
'scripts/init_pco.py',
'scripts/init_rev.py',
'scripts/init_sim100.py',
'scripts/init_sim103.py',
'scripts/init_sim2.py',
'scripts/init_sim50.py',
'scripts/init_sim75.py',
'scripts/init_sim_drift_tracking.py',
'scripts/init_sim_htsms.py',
'scripts/init_sim_htsms_n.py',
'scripts/init_sim_main.py',
'scripts/init_sim_min.py',
'scripts/init_sim_rem.py',
'scripts/init_smi1.py',
'scripts/init_spectro.py',
'scripts/init_spim.py',
'scripts/init_thorcam.py',
'scripts/init_twophoton.py',
'scripts/init_uc480.py',
'scripts/init_ueye.py',
'Scripts/init.py',
'Scripts/init_N1_Ti_Exeter_ZIx.py',
'Scripts/init_N2_Ti_Zyla_lasers.py',
'Scripts/init_Neo.py',
'Scripts/init_NeoSim.py',
'Scripts/init_TIRF.py',
'Scripts/init_TIRF_Neo.py',
'Scripts/init_TIRF_NeoO.py',
'Scripts/init_TIRF_onecam.py',
'Scripts/init_Ti.py',
'Scripts/init_UOA_n.py',
'Scripts/init_UOA_n2.py',
'Scripts/init_Y1.py',
'Scripts/init_Zyla.py',
'Scripts/init_drift_tracking.py',
'Scripts/init_emccd_basic.py',
'Scripts/init_htsms.py',
'Scripts/init_htsms_focus_lock.py',
'Scripts/init_micrpi.py',
'Scripts/init_orca.py',
'Scripts/init_pco.py',
'Scripts/init_rev.py',
'Scripts/init_sim100.py',
'Scripts/init_sim103.py',
'Scripts/init_sim2.py',
'Scripts/init_sim50.py',
'Scripts/init_sim75.py',
'Scripts/init_sim_drift_tracking.py',
'Scripts/init_sim_htsms.py',
'Scripts/init_sim_htsms_n.py',
'Scripts/init_sim_main.py',
'Scripts/init_sim_min.py',
'Scripts/init_sim_rem.py',
'Scripts/init_smi1.py',
'Scripts/init_spectro.py',
'Scripts/init_spim.py',
'Scripts/init_thorcam.py',
'Scripts/init_twophoton.py',
'Scripts/init_uc480.py',
'Scripts/init_ueye.py',
)
py.install_sources(scripts_files, subdir:'PYME/Acquire/Scripts')
2 changes: 1 addition & 1 deletion PYME/cluster/PYMERuleServer.py
Original file line numberDiff line numberDiff line change
Expand Up@@ -19,7 +19,7 @@

LOG_STREAMS = True


2+2

def log_stream(stream, logger):
while LOG_STREAMS:
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