BIAliMed

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1. AnaCore AnaCorePublic

   Libraries for managing standard file formats and objects from NGS

   Python 6 1

2. AnaCore-utils AnaCore-utilsPublic

   Scripts for easily process NGS data from medical centers.

   Python 3 1

3. snake-basket snake-basketPublic

   Customisable rules for snakemake.

   Python 3

4. zfq zfqPublic

   FastQ file compressor.

   Python 3

5. miams miamsPublic

   Workflow for detecting microsatellite instability by next-generation sequencing on amplicons.

   JavaScript 2 1

6. SoFuR SoFuRPublic

   Worflow to detect, annotate, filter and vizualize somatic fusions from stranded paired-end RNA-seq from Illumina instruments.

   HTML 1