Biological AI Collaboratory

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1. beast-phylonco beast-phyloncoPublic

   A BEAST2 package for single-cell cancer evolution

   Java 9 5

2. phyloRNAanalysis phyloRNAanalysisPublic

   A phylogenetic analysis from scRNA-seq data using both expression levels and identified SNVs

   R 8 1

3. phyloRNA phyloRNAPublic

   A package to facilitate a phylogenetic analysis of scRNAseq data

   R 7 1

4. Pint PintPublic

   Fast interactions lasso for sparse data

   C 6

5. treeOclock treeOclockPublic

   Implementation of algorithms in the RNNI space, e.g. FINDPATH

   C 4 1

6. tetres tetresPublic

   Package for discrete time trees

   Python 3