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1. CFSAN-Biostatistics/MAGGICCFSAN-Biostatistics/MAGGICPublic

   MAGGIC is an automated workflow for the generation and refinement of Metagenome-Assembled Genomes (MAGs) from metagenomic sequencing data.

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2. CFSAN-Biostatistics/bettercallsalCFSAN-Biostatistics/bettercallsalPublic

   Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

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3. CFSAN-Biostatistics/nowayoutCFSAN-Biostatistics/nowayoutPublic

   nowayout is an ultra-fast automated software pipeline for taxonomic classification of Eukaryotic mitochondrial reads.

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4. CFSAN-Biostatistics/strainfishCFSAN-Biostatistics/strainfishPublic

   strainfish is a weighted ensemble machine learning algorithm with multiple DNA sequence encoders and logic, specifically designed for classification of marker sequences.

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5. CFSAN-Biostatistics/cronologyCFSAN-Biostatistics/cronologyPublic

   cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.

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6. CFSAN-Biostatistics/centriflakenCFSAN-Biostatistics/centriflakenPublic

   centriflaken

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