biocore

Jupyter notebooks to assist with sample processing

Automated taxonomy decoration onto a tree

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

Bayesian Inferential Regression for Differential Microbiome Analysis

The Biological Observation Matrix (BIOM) Format Project

The Microsetta participant facing user interface

A private microservice to support The Microsetta Initiative

Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022