The Bioinformatics Repository

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1. somaticseq somaticseqPublic

   An ensemble approach to accurately detect somatic mutations using SomaticSeq

   Python 206 52

2. neusomatic neusomaticPublic

   NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

   Python 176 50

3. varsim varsimPublic

   VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

   Java 93 31

4. rnacocktail rnacocktailPublic

   Jupyter Notebook 89 46

5. metasv metasvPublic

   MetaSV: An accurate and integrative structural-variant caller for next generation sequencing

   Python 59 20

6. breakseq2 breakseq2Public

   BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants

   Python 25 6