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@biowdl

BioWDL

Bioinformatics workflows and tasks, written in WDL.

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  1. taskstasksPublic

    A collection of reusable WDL tasks. Category:Other

    WDL 89 29

  2. RNA-seqRNA-seqPublic

    A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

    WDL 34 18

  3. germline-DNAgermline-DNAPublic

    A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

    WDL 26 7

  4. wdl-packagerwdl-packagerPublic

    Package a WDL and its imports into a zip file

    Python 7 2

  5. wdl-aidwdl-aidPublic

    Automatic Input Documentation for WDL workflows

    Python 12 2

  6. ngs-performance-choicesngs-performance-choicesPublic

    Which tools to choose based on various performance metrics.

    12

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