blakemeyerslab

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1. Phasis PhasisPublic

   Computational framework for discovery and classification of phased small RNA loci in plants.

   Python 1

2. PHASIS_forked PHASIS_forkedPublic

   Forked from atulkakrana/PHASIS

   Suite for phased clusters discovery, comparison, annotation and to identify miRNA triggers - uses MapReduce model [In review]

   Python

3. preprocess.seq preprocess.seqPublic

   Forked from atulkakrana/preprocess.seq

   Parallelized pipeline for pre-processing (Illumina) and quality assessment of sequencing libraries [Published]

   Python

4. sPARTA sPARTAPublic

   Forked from atulkakrana/sPARTA

   miRNA-target prediction and PARE-seq based validation tool - uses MapReduce model [Published]

   Python

5. phasiRNAClassifier phasiRNAClassifierPublic

   Forked from pupatel/phasiRNAClassifier

   Multi-modal Machine learning based pipeline using NLP -Bag-of-Words to identify sequence-based and structural features that distinguish phasiRNAs from other small RNAs

   Python

6. miTRATA miTRATAPublic

   miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis

   Python