braingeneers

Contains the full stack of braingeneers services as well as start/stop procedures.

Pipeline components for microscopy post-processing and analysis

NWB extension for cell organoid, assembloid, slices, and other cell culture experiments. Captures cell, cell lineage, genetic, experimental, and pharmacological metadata.

A suite of computational neuroscience analyses powered by agents

High-dimensional Interpretation for Physiological Patterns in Intercellular Electrophysiology (HIPPIE), a cVAE framework designed for multimodal neuron classification and clustering by integrating extracellular action potential waveforms with spike-timing derived measurements.

Search and display cells in foundation model embedding space

STLs, STEP files for CAD of our fluorescent microscope and stage-top CO2 Incubator.

IoT messaging-based workflow orchestration framework with containerized ephys analysis for high-density MEA data