Add codespell support with configuration and fixes - #103

Merged
mihaic merged 6 commits into
brainiak:masterfrom
yarikoptic:enh-codespell
Apr 16, 2026
Merged

Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom
yarikoptic:enh-codespell

Conversation

@yarikoptic

@yarikopticyarikoptic commented Apr 16, 2026

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Copy Markdown
Contributor

Add codespell configuration and fix existing typos.

More about codespell: https://github.com/codespell-project/codespell

I personally introduced it to over a hundred of projects already mostly with a positive feedback
(see the "improveit-dashboard").

CI workflow has 'permissions' set only to 'read' so also should be safe.

Changes

Configuration & Infrastructure

  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action

Typo Fixes

Ambiguous typos fixed manually (19 fixes with context review):

  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)

Typos codespell missed (fixed manually):

  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)

Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):
Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.

Historical Context

This project had 3 prior commits fixing typos manually (grep for "typo" in git log),
demonstrating the value of automated spell-checking.

Testing

  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified

🤖 Generated with Claude Code and love to typos free code

yarikopticand others added 6 commits April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic merged commit 00762e7 into brainiak:masterApr 16, 2026
1 of 2 checks passed
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@mihaicmihaicmihaic approved these changes

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2 participants

@yarikoptic@mihaic
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
Add codespell support with configuration and fixes - #103
Merged
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Apr 16, 2026
Merged
Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Conversation
@yarikoptic
@yarikopticyarikoptic
commented
Apr 16, 2026

Copy link


Copy Markdown

Contributor
Add codespell configuration and fix existing typos.
More about codespell: https://github.com/codespell-project/codespell
I personally introduced it to over a hundred of projects already mostly with a positive feedback

(see the "improveit-dashboard").
CI workflow has 'permissions' set only to 'read' so also should be safe.
Changes
Configuration & Infrastructure
  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action
Typo Fixes
Ambiguous typos fixed manually (19 fixes with context review):
  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)
Typos codespell missed (fixed manually):
  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)
Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):

Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.
Historical Context
This project had 3 prior commits fixing typos manually (grep for "typo" in git log),

demonstrating the value of automated spell-checking.
Testing
  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified
🤖 Generated with Claude Code and love to typos free code
yarikopticand others
added 6 commits
April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic
merged commit 00762e7
into
brainiak:masterApr 16, 2026

1 of 2 checks passed

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Already have an account?
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@mihaicmihaicmihaic approved these changes

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Milestone


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Development

Successfully merging this pull request may close these issues.

2 participants

@yarikoptic@mihaic

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Add codespell support with configuration and fixes - #103
Merged
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Apr 16, 2026
Merged
Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Conversation
@yarikoptic
@yarikopticyarikoptic
commented
Apr 16, 2026

Copy link


Copy Markdown

Contributor
Add codespell configuration and fix existing typos.
More about codespell: https://github.com/codespell-project/codespell
I personally introduced it to over a hundred of projects already mostly with a positive feedback

(see the "improveit-dashboard").
CI workflow has 'permissions' set only to 'read' so also should be safe.
Changes
Configuration & Infrastructure
  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action
Typo Fixes
Ambiguous typos fixed manually (19 fixes with context review):
  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)
Typos codespell missed (fixed manually):
  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)
Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):

Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.
Historical Context
This project had 3 prior commits fixing typos manually (grep for "typo" in git log),

demonstrating the value of automated spell-checking.
Testing
  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified
🤖 Generated with Claude Code and love to typos free code
yarikopticand others
added 6 commits
April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic
merged commit 00762e7
into
brainiak:masterApr 16, 2026

1 of 2 checks passed

Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

@mihaicmihaicmihaic approved these changes

Assignees


No one assigned


Labels


None yet


Projects


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@yarikoptic@mihaic

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Add codespell support with configuration and fixes - #103
Merged
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Apr 16, 2026
Merged
Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Conversation
@yarikoptic
@yarikopticyarikoptic
commented
Apr 16, 2026

Copy link


Copy Markdown

Contributor
Add codespell configuration and fix existing typos.
More about codespell: https://github.com/codespell-project/codespell
I personally introduced it to over a hundred of projects already mostly with a positive feedback

(see the "improveit-dashboard").
CI workflow has 'permissions' set only to 'read' so also should be safe.
Changes
Configuration & Infrastructure
  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action
Typo Fixes
Ambiguous typos fixed manually (19 fixes with context review):
  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)
Typos codespell missed (fixed manually):
  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)
Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):

Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.
Historical Context
This project had 3 prior commits fixing typos manually (grep for "typo" in git log),

demonstrating the value of automated spell-checking.
Testing
  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified
🤖 Generated with Claude Code and love to typos free code
yarikopticand others
added 6 commits
April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic
merged commit 00762e7
into
brainiak:masterApr 16, 2026

1 of 2 checks passed

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@mihaicmihaicmihaic approved these changes

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2 participants

@yarikoptic@mihaic

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
Add codespell support with configuration and fixes - #103
Merged
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Apr 16, 2026
Merged
Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Conversation
@yarikoptic
@yarikopticyarikoptic
commented
Apr 16, 2026

Copy link


Copy Markdown

Contributor
Add codespell configuration and fix existing typos.
More about codespell: https://github.com/codespell-project/codespell
I personally introduced it to over a hundred of projects already mostly with a positive feedback

(see the "improveit-dashboard").
CI workflow has 'permissions' set only to 'read' so also should be safe.
Changes
Configuration & Infrastructure
  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action
Typo Fixes
Ambiguous typos fixed manually (19 fixes with context review):
  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)
Typos codespell missed (fixed manually):
  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)
Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):

Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.
Historical Context
This project had 3 prior commits fixing typos manually (grep for "typo" in git log),

demonstrating the value of automated spell-checking.
Testing
  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified
🤖 Generated with Claude Code and love to typos free code
yarikopticand others
added 6 commits
April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic
merged commit 00762e7
into
brainiak:masterApr 16, 2026

1 of 2 checks passed

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@mihaicmihaicmihaic approved these changes

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Development

Successfully merging this pull request may close these issues.

2 participants

@yarikoptic@mihaic

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Add codespell support with configuration and fixes - #103
Merged
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Apr 16, 2026
Merged
Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Conversation
@yarikoptic
@yarikopticyarikoptic
commented
Apr 16, 2026

Copy link


Copy Markdown

Contributor
Add codespell configuration and fix existing typos.
More about codespell: https://github.com/codespell-project/codespell
I personally introduced it to over a hundred of projects already mostly with a positive feedback

(see the "improveit-dashboard").
CI workflow has 'permissions' set only to 'read' so also should be safe.
Changes
Configuration & Infrastructure
  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action
Typo Fixes
Ambiguous typos fixed manually (19 fixes with context review):
  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)
Typos codespell missed (fixed manually):
  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)
Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):

Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.
Historical Context
This project had 3 prior commits fixing typos manually (grep for "typo" in git log),

demonstrating the value of automated spell-checking.
Testing
  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified
🤖 Generated with Claude Code and love to typos free code
yarikopticand others
added 6 commits
April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic
merged commit 00762e7
into
brainiak:masterApr 16, 2026

1 of 2 checks passed

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Already have an account?
Sign in to comment

Reviewers

@mihaicmihaicmihaic approved these changes

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Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@yarikoptic@mihaic

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Add codespell support with configuration and fixes - #103
Merged
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Apr 16, 2026
Merged
Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Conversation
@yarikoptic
@yarikopticyarikoptic
commented
Apr 16, 2026

Copy link


Copy Markdown

Contributor
Add codespell configuration and fix existing typos.
More about codespell: https://github.com/codespell-project/codespell
I personally introduced it to over a hundred of projects already mostly with a positive feedback

(see the "improveit-dashboard").
CI workflow has 'permissions' set only to 'read' so also should be safe.
Changes
Configuration & Infrastructure
  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action
Typo Fixes
Ambiguous typos fixed manually (19 fixes with context review):
  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)
Typos codespell missed (fixed manually):
  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)
Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):

Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.
Historical Context
This project had 3 prior commits fixing typos manually (grep for "typo" in git log),

demonstrating the value of automated spell-checking.
Testing
  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified
🤖 Generated with Claude Code and love to typos free code
yarikopticand others
added 6 commits
April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic
merged commit 00762e7
into
brainiak:masterApr 16, 2026

1 of 2 checks passed

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Already have an account?
Sign in to comment

Reviewers

@mihaicmihaicmihaic approved these changes

Assignees


No one assigned


Labels


None yet


Projects


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@yarikoptic@mihaic

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
Add codespell support with configuration and fixes - #103
Merged
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Apr 16, 2026
Merged
Add codespell support with configuration and fixes#103
mihaic merged 6 commits into
brainiak:masterfrom 
yarikoptic:enh-codespell
Conversation
@yarikoptic
@yarikopticyarikoptic
commented
Apr 16, 2026

Copy link


Copy Markdown

Contributor
Add codespell configuration and fix existing typos.
More about codespell: https://github.com/codespell-project/codespell
I personally introduced it to over a hundred of projects already mostly with a positive feedback

(see the "improveit-dashboard").
CI workflow has 'permissions' set only to 'read' so also should be safe.
Changes
Configuration & Infrastructure
  • Added .codespellrc with skip patterns for .git, vendored jsPsych, PDFs, SVGs, CSS
  • Created GitHub Actions workflow to check spelling on push to master and PRs
  • Uses pinned codespell-project/actions-codespell@v2.2 action
Typo Fixes
Ambiguous typos fixed manually (19 fixes with context review):
  • tyes → yes in 3 files (neither codespell suggestion was correct; flag is --yesToPrompts)
  • Initative → Initiative, commnds → commands, thow → throw
  • registerd → registered, complext → complex, theses → these
  • elipse → ellipse, Complie → Compile, Interace → Interface
  • doesnt → doesn't (2), cant → can't (2)
Typos codespell missed (fixed manually):
  • usnername → username (docs/subject-feedback.md)
  • initScrannerStream → initScannerStream (docs/for-developers.md)
  • getAllReponses → getAllResponses (docs/for-developers.md)
  • initalize → initialize (projects/sample/initialize.py, missed by codespell)
Non-ambiguous typos fixed automatically (65 fixes in 38 files via codespell -w):

Common fixes include: recieves → receives, requets/reqeusts → requests,
initalize → initialize, calcluate → calculate, utilites → utilities,
wholely → wholly, paritally → partially, occured → occurred,
runnning → running, instatiated → instantiated, and many more.
Historical Context
This project had 3 prior commits fixing typos manually (grep for "typo" in git log),

demonstrating the value of automated spell-checking.
Testing
  • Codespell passes with zero errors after all fixes
  • All changes are in comments, docstrings, help strings, and documentation — no functional code modified
🤖 Generated with Claude Code and love to typos free code
yarikopticand others
added 6 commits
April 16, 2026 12:09
@yarikoptic
Add GitHub Actions workflow for codespell on master
041f275
@yarikoptic
Add rudimentary codespell config
88669e4
@yarikoptic@claude
Update codespell config to skip vendored web/jsPsych
738386b
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic@claude
Fix ambiguous typos and typos codespell missed (manual context review)
a974feb
Ambiguous typos (multiple codespell suggestions, resolved by context):
- Initative -> Initiative (docs/using-bids-data.md)
- tyes -> yes (3 files; neither codespell suggestion was correct)
- commnds -> commands (rtCommon/projectServer.py)
- thow -> throw (rtCommon/clientInterface.py)
- registerd -> registered (rtCommon/remoteable.py)
- complext -> complex (rtCommon/remoteable.py)
- theses -> these (rtCommon/webServer.py)
- elipse -> ellipse (web/html/jsPsychFeedback.html)
- doesnt -> doesn't (tests/test_bidsIncremental.py, scripts/run-docker.sh)
- cant -> can't (docs/for-developers.md, 2 occurrences)
- Complie -> Compile (scripts/install-on-linux.sh)
- Interace -> Interface (rtCommon/projectServerRPC.py)
Typos codespell missed (found during manual review):
- usnername -> username (docs/subject-feedback.md)
- initScrannerStream -> initScannerStream (docs/for-developers.md)
- getAllReponses -> getAllResponses (docs/for-developers.md)
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@yarikoptic
[DATALAD RUNCMD] Fix non-ambiguous typos automatically with codespell -w
59d0a8d
65 typos across 30 files, all with single-suggestion fixes including:
- recieves -> receives, requets/reqeusts/requsts -> requests
- initalize -> initialize (4), calcluate -> calculate (2)
- utilites -> utilities (2), miliseconds -> milliseconds (2)
- wholely -> wholly (2), paritally -> partially (2), occured -> occurred (3)
- runnning -> running (2), instatiated -> instantiated (2)
- Various other typos in code comments, docstrings, and documentation
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
=== Do not change lines below ===
{
"chain": [],
"cmd": "uvx codespell -w",
"exit": 0,
"extra_inputs": [],
"inputs": [],
"outputs": [],
"pwd": "."
}
^^^ Do not change lines above ^^^
@yarikoptic@claude
Fix additional initalize -> initialize typo codespell missed
f7e6dc4
Co-Authored-By: Claude Code 2.1.111 / Claude Opus 4.6 <noreply@anthropic.com>
@mihaic
mihaic
merged commit 00762e7
into
brainiak:masterApr 16, 2026

1 of 2 checks passed

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2 participants

@yarikoptic@mihaic