update 'config' folder to 'conf' in README to match the folder name i…#13

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6 changes: 3 additions & 3 deletions mindeye/README.md
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
* Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
1. `source .venv/bin/activate`
2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
* Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
* `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
* `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
* `storage_path` should be set to `<path/to/rt_all_data>`
* `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
* `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
* The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems.
* The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems.

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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update 'config' folder to 'conf' in README to match the folder name i…#13

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update 'config' folder to 'conf' in README to match the folder name i…
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6 changes: 3 additions & 3 deletions
mindeye/README.md

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
 * Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
 1. `source .venv/bin/activate`
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
 3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
 * Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
 * `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
 * `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
 * `storage_path` should be set to `<path/to/rt_all_data>`
 * `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
 * `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
 * The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 
 * The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
update 'config' folder to 'conf' in README to match the folder name i…#13

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update 'config' folder to 'conf' in README to match the folder name i…
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6 changes: 3 additions & 3 deletions
mindeye/README.md

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
 * Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
 1. `source .venv/bin/activate`
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
 3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
 * Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
 * `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
 * `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
 * `storage_path` should be set to `<path/to/rt_all_data>`
 * `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
 * `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
 * The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 
 * The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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update 'config' folder to 'conf' in README to match the folder name i…#13

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6 changes: 3 additions & 3 deletions
mindeye/README.md

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
 * Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
 1. `source .venv/bin/activate`
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
 3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
 * Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
 * `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
 * `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
 * `storage_path` should be set to `<path/to/rt_all_data>`
 * `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
 * `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
 * The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 
 * The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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update 'config' folder to 'conf' in README to match the folder name i…#13

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6 changes: 3 additions & 3 deletions
mindeye/README.md

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
 * Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
 1. `source .venv/bin/activate`
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
 3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
 * Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
 * `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
 * `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
 * `storage_path` should be set to `<path/to/rt_all_data>`
 * `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
 * `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
 * The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 
 * The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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update 'config' folder to 'conf' in README to match the folder name i…#13

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6 changes: 3 additions & 3 deletions
mindeye/README.md

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Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
 * Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
 1. `source .venv/bin/activate`
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
 3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
 * Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
 * `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
 * `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
 * `storage_path` should be set to `<path/to/rt_all_data>`
 * `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
 * `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
 * The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 
 * The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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update 'config' folder to 'conf' in README to match the folder name i…#13

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6 changes: 3 additions & 3 deletions
mindeye/README.md

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Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
 * Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
 1. `source .venv/bin/activate`
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
 3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
 * Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
 * `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
 * `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
 * `storage_path` should be set to `<path/to/rt_all_data>`
 * `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
 * `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
 * The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 
 * The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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update 'config' folder to 'conf' in README to match the folder name i…#13

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update 'config' folder to 'conf' in README to match the folder name i…
#13
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6 changes: 3 additions & 3 deletions
mindeye/README.md

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,7 @@ We use uv, a fast Python package manager ([documentation](https://github.com/ast
 * Install all dependencies from pyproject.toml pinned by uv.lock
3. Activate the environment
 1. `source .venv/bin/activate`
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the config folder
 2. Check the Python version: `python --version`; it should match the version listed in the file `.python_version` located in the conf folder
 3. You can use the command `deactivate` to deactivate the environment

### Installing FSL
Expand All@@ -93,12 +93,12 @@ We use [FSL](https://fsl.fmrib.ox.ac.uk/fsl/docs/#/) for real-time compatible pr
2. Clone the repository containing data related to Princeton 3T scans
 * Navigate to the desired location (for example, this can be inside rtcloud-projects/mindeye): `cd /path/to/rtcloud-projects/mindeye`
 * `git clone https://huggingface.co/datasets/rishab-iyer1/3t`
3. Create `config/config.json` with the appropriate file paths. `config/config_example.json` is provided for reference.
3. Create `conf/config.json` with the appropriate file paths. `conf/config_example.json` is provided for reference.
 * `project_path` should be set to `<path/to/rtcloud-projects/mindeye>`
 * `storage_path` should be set to `<path/to/rt_all_data>`
 * `data_path` and `derivatives_path` should be set to `<path/to/3t/data>` and `<path/to/3t/derivatives>`, respectively
 * `fsl_path` should be set to the fsl/bin folder containing the executables of various FSL functions. This is often located in your home directory at `~/fsl/bin`
 * The local copy that you update (`config/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 
 * The local copy that you update (`conf/config.json`) will be automatically ignored by git (due to [.gitignore](.gitignore)). It is good practice to not track user-specific file paths with version control, since each user will have different file systems. 

## Get started!
First, for an overview of the pipeline and description of stimuli, read [docs/00-pipeline.md](docs/00-pipeline.md). We provide three guides, described here. The first two are quickstart guides that focus on specific code snippets for you to run and are intended to simplify the setup process. The third document is a procedural guide that provides an overview of the different components that go into the real-time experiment.
Expand Down