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  1. echtvarechtvarPublic

    using all the bits for echt rapid variant annotation and filtering

    Rust 163 17

  2. mosdepthmosdepthPublic

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 869 107

  3. slivarslivarPublic

    genetic variant expressions, annotation, and filtering for great good.

    Nim 275 26

  4. somaliersomalierPublic

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim 332 45

  5. vcfannovcfannoPublic

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 404 56

  6. cyvcf2cyvcf2Public

    cython + htslib == fast VCF and BCF processing

    Cython 446 76