All issues

Search results

How to get unfiltered dge matrix which including empty droplets?

Status: Open.

#561 In broadinstitute/Drop-seq;

· echovv opened on Oct 21, 2025

Plot sign tests effect sizes using eQTLs and pairs

Status: Open.

#547 In broadinstitute/Drop-seq;

· kshakir opened on Aug 21, 2025

email_outputs should gracefully handle missing workflow_id

Status: Open.

#533 In broadinstitute/Drop-seq;

· kshakir opened on Jun 27, 2025

Update PrepareEqtlData such that prepare_tensorqtl_data is no longer needed

Status: Open.

#529 In broadinstitute/Drop-seq;

· kshakir opened on Jun 20, 2025

OptimusDropSeqLocusFunctionComparisonTest fails

Status: Open.

#526 In broadinstitute/Drop-seq;

· alecw opened on Jun 18, 2025

Logging issue with large numbers of sequencing reads

Status: Open.

#505 In broadinstitute/Drop-seq;

· jamesnemesh opened on May 7, 2025

DonorAssignmentQC not emitting plotCommonDonorsFdrDistribution result

Status: Open.

#441 In broadinstitute/Drop-seq;

· jamesnemesh opened on Aug 8, 2024

ConvertToReflFlat skips many transcripts

Status: Open.

#333 In broadinstitute/Drop-seq;

· auesro opened on Mar 21, 2023

Naming suggestion for outputs of DetectDoublets

Status: Open.

#332 In broadinstitute/Drop-seq;

· ruochiz opened on Mar 16, 2023

GatherGeneGCLength breaks on transcript writing

Status: Open.

#305 In broadinstitute/Drop-seq;

· jamesnemesh opened on May 9, 2022

GenerateSyntheticDoublets needs unit tests

Status: Open.

#290 In broadinstitute/Drop-seq;

· jamesnemesh opened on Jan 31, 2022