CASM IT

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1. ascatNgsascatNgsPublic

   Somatic copy number analysis using WGS paired end wholegenome sequencing

   Perl 71 17

2. BRASSBRASSPublic

   Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

   Perl 61 19

3. cgpPindelcgpPindelPublic

   Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel

   Perl 28 6

4. cgpCaVEManWrappercgpCaVEManWrapperPublic

   Reference implementation of CGP workflow for CaVEMan SNV analysis

   Perl 9 4

5. proportionalmultibwproportionalmultibwPublic

   JBrowse plugin to display multiple BigWig tracks as a stacked proportion

   JavaScript 3 1

6. VAGrENTVAGrENTPublic

   A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences

   Perl 9 7