Run precommit autoupdate

.pre-commit-config.yaml

@@ -1,14 +1,14 @@
 repos:
  - repo: https://github.com/psf/black
- rev: 22.10.0
+ rev: 23.1.0
  hooks:
  - id: black
  - repo: https://github.com/pycqa/flake8
- rev: 5.0.4
+ rev: 6.0.0
  hooks:
  - id: flake8
  - repo: https://github.com/pycqa/isort
- rev: 5.10.1
+ rev: 5.12.0
  hooks:
  - id: isort
  name: isort (python)

case_utils/case_file/__init__.py

@@ -39,6 +39,7 @@
 
 DEFAULT_PREFIX = "http://example.org/kb/"
 
+
 # Shortcut syntax for defining an immutable named tuple is noted here:
 # https://docs.python.org/3/library/typing.html#typing.NamedTuple
 # via the "See also" box here: https://docs.python.org/3/library/collections.html#collections.namedtuple

case_utils/case_sparql_construct/__init__.py

@@ -98,7 +98,7 @@ def main() -> None:
  construct_query_result = in_graph.query(construct_query_object)
  _logger.debug("type(construct_query_result) = %r." % type(construct_query_result))
  _logger.debug("len(construct_query_result) = %d." % len(construct_query_result))
- for (row_no, row) in enumerate(construct_query_result):
+ for row_no, row in enumerate(construct_query_result):
  if row_no == 0:
  _logger.debug("row[0] = %r." % (row,))
  out_graph.add(row)

case_utils/case_sparql_select/__init__.py

@@ -86,10 +86,10 @@ def graph_and_query_to_data_frame(
  select_query_object = rdflib.plugins.sparql.processor.prepareQuery(
  select_query_text, initNs=nsdict
  )
- for (row_no, row) in enumerate(_graph.query(select_query_object)):
+ for row_no, row in enumerate(_graph.query(select_query_object)):
  tally = row_no + 1
  record = []
- for (column_no, column) in enumerate(row):
+ for column_no, column in enumerate(row):
  if column is None:
  column_value = ""
  elif (

case_utils/ontology/src/ontology_and_version_iris.py

@@ -28,7 +28,8 @@
 
 def concept_is_cdo_concept(n_concept: rdflib.URIRef) -> bool:
  """
- This function is purposefully distinct from the function used in case_validate. Within this script, the publishing history of CASE and UCO is reviewed."""
+ This function is purposefully distinct from the function used in case_validate. Within this script, the publishing history of CASE and UCO is reviewed.
+ """
  concept_iri = str(n_concept)
  return (
  concept_iri.startswith("https://ontology.unifiedcyberontology.org/")

tests/case_utils/case_sparql_select/test_data_frame_to_table_text_json.py

@@ -36,9 +36,9 @@
 )
 
 
-def make_data_frame_to_json_table_text_parameters() -> typing.Iterator[
- typing.Tuple[str, str, bool, bool]
-]:
+def make_data_frame_to_json_table_text_parameters() -> (
+ typing.Iterator[typing.Tuple[str, str, bool, bool]]
+):
  for use_header in [False, True]:
  for use_index in [False, True]:
  for output_mode in ["csv", "html", "json", "md", "tsv"]: