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  1. Suite2p-Output-ProcessorSuite2p-Output-ProcessorPublic

    Process the stabilized outputs of Suite2p for manual ROI selection

    ImageJ Macro 1 1

  2. Depth-FinderDepth-FinderPublic

    Goofy excel spreadsheet for finding depth during 2p imaging experiments which needs to be modernized.

    ImageJ Macro

  3. ROI-GUI-LabelerROI-GUI-LabelerPublic

    ImageJ Macro for helping the manual labeling of ROIs

    ImageJ Macro

  4. ThorStackSplitterThorStackSplitterPublic

    This is an ImageJ macro which takes in the OME Tiffs output from ThorImageLS and does a variety of things to get them ready for image stabilization and processing.

    ImageJ Macro 3

  5. ThorSync-ProcessorThorSync-ProcessorPublic

    Opens and converts ThorSync to csv

    Python

  6. AbbyCui/CalciumImagingAnalysisAbbyCui/CalciumImagingAnalysisPublic

    Python 1 3