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1. AllenNeuralDynamics/aind-exaspim-data-transformationAllenNeuralDynamics/aind-exaspim-data-transformationPublic

   A library to convert imaris (ims) files to zarr v3 in the compression step of the aind-data-transfer-service upload process from AIND network to S3 bucket.

   Python

2. AllenNeuralDynamics/aind-hcr-data-transformationAllenNeuralDynamics/aind-hcr-data-transformationPublic

   Transforms CZI files into Zarr. This is meant to be used in the data transfer service.

   Python

3. AllenNeuralDynamics/aind-proteomics-stitchAllenNeuralDynamics/aind-proteomics-stitchPublic

   Stitching for the proteomics pipeline

   Python

4. AllenNeuralDynamics/aind-spot-spectral-unmixingAllenNeuralDynamics/aind-spot-spectral-unmixingPublic

   A capsule library for spectrally unmixing spots detected in multichannel lightsheet miscroscopy experiments.

   Python 1

5. AllenNeuralDynamics/aind-z1-camera-alignmentAllenNeuralDynamics/aind-z1-camera-alignmentPublic

   Code to align spectrally adjacent channels in Zeiss Lightsheet 7 (Z1) datasets

   Python

6. jaydenleong/piponicjaydenleong/piponicPublic

   This project aims to reduce urban food insecurity by reducing the cost and labour requirements of monitoring aquaponic or hydroponic food-growing systems.

   Python 1 1