CCDM Bioinformatics

🧬 EffectorFisher links pangenome isoforms to disease traits to predict phenotype-associated effectors. 🌾🦠

Python 0MIT 0 0 0 Updated Jul 8, 2026

Predict various features relevant to plant host-cell translocation and sub-cellular localisation, for a given protein FASTA input

Python 0GPL-3.0 0 0 0 Updated Jul 1, 2026

SUSSscan Public

Scan fungal proteome FASTA for identifiable effectors and predicted SUSS structural families based on RemEff clusters

Python 0GPL-3.0 0 0 0 Updated Jul 1, 2026

predector Public

Effector prediction pipeline based on protein properties.

Shell 16Apache-2.0 10 15 (1 issue needs help) 1 Updated Jul 18, 2025

predector-utils Public

Utilities for running the predector pipeline.

Python 0Apache-2.0 1 2 1 Updated Apr 11, 2025

postasm Public Forked from darcyabjones/postasm

QC and tidying on assembled genomes.

Groovy 0Apache-2.0 1 0 0 Updated Nov 15, 2024

pante Public Forked from darcyabjones/pante

A pipeline for predicting and masking transposable elements in multiple genomes.

Groovy 0Apache-2.0 10 0 0 Updated Nov 15, 2024

qcflow Public Forked from darcyabjones/qcflow

Perform basic QC on illumina data

Groovy 0MIT 1 0 0 Updated Nov 15, 2024

mitoflow Public Forked from darcyabjones/mitoflow

A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

Groovy 0MIT 1 0 0 Updated Nov 15, 2024

ccdmb.github.io Public

Front page for the CCDM bioinformatics group.

0Apache-2.0 0 0 0 Updated Nov 13, 2023

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