cEvo Public Resources

phylogenetic trees for the 2023/24 season in Switzerland

Nextstrain build of the Orthomarburgvirus marburgense species taxon

The database and automation infrastructure used in the Swiss SARS-CoV-2 Sequencing Consortium (S3C)

Pipeline for estimating putatively independent introductions of SARS-CoV-2 from genome sequences.

Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".

Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)

Inferring epidemiological parameters from phylogenies with BEAST2

Additional files for our paper "Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data" submitted to PLOS Currents Outbreaks in September 2014.