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Computational Biology Berlin

11 followers
Berlin, Germany
dr.sebastian.koehler@gmail.com

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jannovar jannovarPublic
Annotation of VCF variants with functional impact and from databases (executable+library)
Java 68 33
Q QPublic
Q ChIP-seq peak caller
C++ 18 3
asdpex asdpexPublic
Java 8 2
ngspipeline ngspipelinePublic
Our NGS Pipeline using Nextflow
7 3
charite.github.io charite.github.ioPublic
Charité Computational Biology Website
CSS 7 6
denovocaller denovocallerPublic
Denovo Variation Caller for simple familie trios (mother, father, affected child)
Java 2

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Showing 10 of 13 repositories

jannovar Public
Annotation of VCF variants with functional impact and from databases (executable+library)
charite/jannovar's past year of commit activity
Java 68 33 32 (3 issues need help) 0 Updated Aug 10, 2026
Q Public
Q ChIP-seq peak caller
charite/Q's past year of commit activity
C++ 18 3 1 0 Updated Jul 17, 2024
asdpex Public
charite/asdpex's past year of commit activity
Java 8 2 1 4 Updated Dec 2, 2022
charite.github.io Public
Charité Computational Biology Website
charite/charite.github.io's past year of commit activity
CSS 7GPL-2.0 6 0 0 Updated Jan 15, 2019
hyperSMURF Public
Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
charite/hyperSMURF's past year of commit activity
Java 2GPL-3.0 4 0 0 Updated Dec 16, 2017
topodombar Public
Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries
charite/topodombar's past year of commit activity
Python 1BSD-2-Clause 4 0 0 Updated Nov 8, 2017
hyperSMURF-tutorial Public Forked from visze/hyperSMURF-tutorial
Tutorial how you can the hyperSMURF algorithm in your Java application
charite/hyperSMURF-tutorial's past year of commit activity
Java 0 1 0 0 Updated Apr 24, 2017
weka-GWAVA Public
Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832
charite/weka-GWAVA's past year of commit activity
Java 0GPL-3.0 0 0 0 Updated Aug 16, 2016
chipseqknime Public
KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/
charite/chipseqknime's past year of commit activity
CSS 0 0 0 0 Updated Mar 29, 2016
jannovar_tutorial Public archive
Jannovar Tutorial Applications
charite/jannovar_tutorial's past year of commit activity
Java 1 1 2 1 Updated May 27, 2015

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