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1. fishplotfishplotPublic

   Create timecourse "fish plots" that show changes in the clonal architecture of tumors

   R 172 45

2. copyCatcopyCatPublic

   a parallel R package for detecting copy-number alterations from short sequencing reads

   R 24 9

3. commute-timescommute-timesPublic

   calculate drive times from multiple locations and visualize them in google earth

   Ruby 4 1

4. bioinfoSnippetsbioinfoSnippetsPublic

   Short snippets of code useful for bioinformatics and genomics

   Perl 2 2

5. RMEmodRMEmodPublic

   A tool for discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors

   Ruby 1 2

6. netChopScrapernetChopScraperPublic

   Allows programmatic retrieval of peptide cleavage predictions from the NetChop server at http://www.cbs.dtu.dk/services/NetChop/

   Perl