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Dynamic modules don't necessarily have a __package__ attribute - #116
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When trying to serialize some of the dynamically generated modules that pytest generates, errors like these are encountered. ``` File "/Users/mvanniekerk/miniconda3/envs/py36/lib/python3.6/pickle.py", line 476, in save f(self, obj) # Call unbound method with explicit self File "/Users/mvanniekerk/src/pytest-dask/.tox/py36/lib/python3.6/site-packages/cloudpickle/cloudpickle.py", line 366, in save_function self.save_function_tuple(obj) File "/Users/mvanniekerk/src/pytest-dask/.tox/py36/lib/python3.6/site-packages/cloudpickle/cloudpickle.py", line 494, in save_function_tuple itertools.chain(f_globals.values(), closure_values or ()), File "/Users/mvanniekerk/src/pytest-dask/.tox/py36/lib/python3.6/site-packages/cloudpickle/cloudpickle.py", line 388, in _save_subimports if isinstance(x, types.ModuleType) and x.__package__: File "/Users/mvanniekerk/src/pytest-dask/.tox/py36/lib/python3.6/site-packages/py/_apipkg.py", line 123, in __makeattr raise AttributeError(name) AttributeError: __package__ ``` After applying this change the resulting serialized objects work correctly
Codecov Report
@@ Coverage Diff @@## master #116 +/- ##
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+ Coverage 83.66% 84.02% +0.35%
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Files 2 2 Lines 557 557 Branches 107 107 ==========================================
+ Hits 466 468 +2 + Misses 64 63 -1 + Partials 27 26 -1
Continue to review full report at Codecov.
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| # check if any known dependency is an imported package | ||
| for x in top_level_dependencies: | ||
| if isinstance(x, types.ModuleType) and x.__package__: | ||
| if isinstance(x, types.ModuleType) and hasattr(x, '__package__') and x.__package__: |
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Hi @mariusvniekerk, I just happened to see this PR and I am interested in this change. Would it make sense to add a simple test here if it is not too difficult?
rgbkrk
commented
Aug 15, 2017
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Re-kicking the pypy build, everything else passed. |
rgbkrk
commented
Aug 15, 2017
Member
Definitely just a Travis hiccup (note that the pypy one hadn't even been run, it was just stalled). |
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2.0.0 ===== - Python 3.5 is no longer supported. - Support for registering modules to be serialised by value. This allows code defined in local modules to be serialised and executed remotely without those local modules installed on the remote machine. ([PR #417](cloudpipe/cloudpickle#417)) - Fix a side effect altering dynamic modules at pickling time. ([PR #426](cloudpipe/cloudpickle#426)) - Support for pickling type annotations on Python 3.10 as per [PEP 563]( https://www.python.org/dev/peps/pep-0563/) ([PR #400](cloudpipe/cloudpickle#400)) - Stricter parametrized type detection heuristics in _is_parametrized_type_hint to limit false positives. ([PR #409](cloudpipe/cloudpickle#409)) - Support pickling / depickling of OrderedDict KeysView, ValuesView, and ItemsView, following similar strategy for vanilla Python dictionaries. ([PR #423](cloudpipe/cloudpickle#423)) - Suppressed a source of non-determinism when pickling dynamically defined functions and handles the deprecation of co_lnotab in Python 3.10+. ([PR #428](cloudpipe/cloudpickle#428)) 1.6.0 ===== - `cloudpickle`'s pickle.Pickler subclass (currently defined as `cloudpickle.cloudpickle_fast.CloudPickler`) can and should now be accessed as `cloudpickle.Pickler`. This is the only officially supported way of accessing it. ([issue #366](cloudpipe/cloudpickle#366)) - `cloudpickle` now supports pickling `dict_keys`, `dict_items` and `dict_values`. ([PR #384](cloudpipe/cloudpickle#384)) 1.5.0 ===== - Fix a bug causing cloudpickle to crash when pickling dynamically created, importable modules. ([issue #360](cloudpipe/cloudpickle#354)) - Add optional dependency on `pickle5` to get improved performance on Python 3.6 and 3.7. ([PR #370](cloudpipe/cloudpickle#370)) - Internal refactoring to ease the use of `pickle5` in cloudpickle for Python 3.6 and 3.7. ([PR #368](cloudpipe/cloudpickle#368)) 1.4.1 ===== - Fix incompatibilities between cloudpickle 1.4.0 and Python 3.5.0/1/2 introduced by the new support of cloudpickle for pickling typing constructs. ([issue #360](cloudpipe/cloudpickle#360)) - Restore compat with loading dynamic classes pickled with cloudpickle version 1.2.1 that would reference the `types.ClassType` attribute. ([PR #359](cloudpipe/cloudpickle#359)) 1.4.0 ===== **This version requires Python 3.5 or later** - cloudpickle can now all pickle all constructs from the ``typing`` module and the ``typing_extensions`` library in Python 3.5+ ([PR #318](cloudpipe/cloudpickle#318)) - Stop pickling the annotations of a dynamic class for Python < 3.6 (follow up on #276) ([issue #347](cloudpipe/cloudpickle#347)) - Fix a bug affecting the pickling of dynamic `TypeVar` instances on Python 3.7+, and expand the support for pickling `TypeVar` instances (dynamic or non-dynamic) to Python 3.5-3.6 ([PR #350](cloudpipe/cloudpickle#350)) - Add support for pickling dynamic classes subclassing `typing.Generic` instances on Python 3.7+ ([PR #351](cloudpipe/cloudpickle#351)) 1.3.0 ===== - Fix a bug affecting dynamic modules occuring with modified builtins ([issue #316](cloudpipe/cloudpickle#316)) - Fix a bug affecting cloudpickle when non-modules objects are added into sys.modules ([PR #326](cloudpipe/cloudpickle#326)). - Fix a regression in cloudpickle and python3.8 causing an error when trying to pickle property objects. ([PR #329](cloudpipe/cloudpickle#329)). - Fix a bug when a thread imports a module while cloudpickle iterates over the module list ([PR #322](cloudpipe/cloudpickle#322)). - Add support for out-of-band pickling (Python 3.8 and later). https://docs.python.org/3/library/pickle.html#example ([issue #308](cloudpipe/cloudpickle#308)) - Fix a side effect that would redefine `types.ClassTypes` as `type` when importing cloudpickle. ([issue #337](cloudpipe/cloudpickle#337)) - Fix a bug affecting subclasses of slotted classes. ([issue #311](cloudpipe/cloudpickle#311)) - Dont pickle the abc cache of dynamically defined classes for Python 3.6- (This was already the case for python3.7+) ([issue #302](cloudpipe/cloudpickle#302)) 1.2.2 ===== - Revert the change introduced in ([issue #276](cloudpipe/cloudpickle#276)) attempting to pickle functions annotations for Python 3.4 to 3.6. It is not possible to pickle complex typing constructs for those versions (see [issue #193]( cloudpipe/cloudpickle#193)) - Fix a bug affecting bound classmethod saving on Python 2. ([issue #288](cloudpipe/cloudpickle#288)) - Add support for pickling "getset" descriptors ([issue #290](cloudpipe/cloudpickle#290)) 1.2.1 ===== - Restore (partial) support for Python 3.4 for downstream projects that have LTS versions that would benefit from cloudpickle bug fixes. 1.2.0 ===== - Leverage the C-accelerated Pickler new subclassing API (available in Python 3.8) in cloudpickle. This allows cloudpickle to pickle Python objects up to 30 times faster. ([issue #253](cloudpipe/cloudpickle#253)) - Support pickling of classmethod and staticmethod objects in python2. arguments. ([issue #262](cloudpipe/cloudpickle#262)) - Add support to pickle type annotations for Python 3.5 and 3.6 (pickling type annotations was already supported for Python 3.7, Python 3.4 might also work but is no longer officially supported by cloudpickle) ([issue #276](cloudpipe/cloudpickle#276)) - Internal refactoring to proactively detect dynamic functions and classes when pickling them. This refactoring also yields small performance improvements when pickling dynamic classes (~10%) ([issue #273](cloudpipe/cloudpickle#273)) 1.1.1 ===== - Minor release to fix a packaging issue (Markdown formatting of the long description rendered on pypi.org). The code itself is the same as 1.1.0. 1.1.0 ===== - Support the pickling of interactively-defined functions with positional-only arguments. ([issue #266](cloudpipe/cloudpickle#266)) - Track the provenance of dynamic classes and enums so as to preseve the usual `isinstance` relationship between pickled objects and their original class defintions. ([issue #246](cloudpipe/cloudpickle#246)) 1.0.0 ===== - Fix a bug making functions with keyword-only arguments forget the default values of these arguments after being pickled. ([issue #264](cloudpipe/cloudpickle#264)) 0.8.1 ===== - Fix a bug (already present before 0.5.3 and re-introduced in 0.8.0) affecting relative import instructions inside depickled functions ([issue #254](cloudpipe/cloudpickle#254)) 0.8.0 ===== - Add support for pickling interactively defined dataclasses. ([issue #245](cloudpipe/cloudpickle#245)) - Global variables referenced by functions pickled by cloudpickle are now unpickled in a new and isolated namespace scoped by the CloudPickler instance. This restores the (previously untested) behavior of cloudpickle prior to changes done in 0.5.4 for functions defined in the `__main__` module, and 0.6.0/1 for other dynamic functions. 0.7.0 ===== - Correctly serialize dynamically defined classes that have a `__slots__` attribute. ([issue #225](cloudpipe/cloudpickle#225)) 0.6.1 ===== - Fix regression in 0.6.0 which breaks the pickling of local function defined in a module, making it impossible to access builtins. ([issue #211](cloudpipe/cloudpickle#211)) 0.6.0 ===== - Ensure that unpickling a function defined in a dynamic module several times sequentially does not reset the values of global variables. ([issue #187](cloudpipe/cloudpickle#205)) - Restrict the ability to pickle annotations to python3.7+ ([issue #193]( cloudpipe/cloudpickle#193) and [issue #196]( cloudpipe/cloudpickle#196)) - Stop using the deprecated `imp` module under Python 3. ([issue #207](cloudpipe/cloudpickle#207)) - Fixed pickling issue with singleton types `NoneType`, `type(...)` and `type(NotImplemented)` ([issue #209](cloudpipe/cloudpickle#209)) 0.5.6 ===== - Ensure that unpickling a locally defined function that accesses the global variables of a module does not reset the values of the global variables if they are already initialized. ([issue #187](cloudpipe/cloudpickle#187)) 0.5.5 ===== - Fixed inconsistent version in `cloudpickle.__version__`. 0.5.4 ===== - Fixed a pickling issue for ABC in python3.7+ ([issue #180]( cloudpipe/cloudpickle#180)). - Fixed a bug when pickling functions in `__main__` that access global variables ([issue #187]( cloudpipe/cloudpickle#187)). 0.5.3 ===== - Fixed a crash in Python 2 when serializing non-hashable instancemethods of built-in types ([issue #144](cloudpipe/cloudpickle#144)). - itertools objects can also pickled ([PR #156](cloudpipe/cloudpickle#156)). - `logging.RootLogger` can be also pickled ([PR #160](cloudpipe/cloudpickle#160)). 0.5.2 ===== - Fixed a regression: `AttributeError` when loading pickles that hold a reference to a dynamically defined class from the `__main__` module. ([issue #131]( cloudpipe/cloudpickle#131)). - Make it possible to pickle classes and functions defined in faulty modules that raise an exception when trying to look-up their attributes by name. 0.5.1 ===== - Fixed `cloudpickle.__version__`. 0.5.0 ===== - Use `pickle.HIGHEST_PROTOCOL` by default. 0.4.4 ===== - `logging.RootLogger` can be also pickled ([PR #160](cloudpipe/cloudpickle#160)). 0.4.3 ===== - Fixed a regression: `AttributeError` when loading pickles that hold a reference to a dynamically defined class from the `__main__` module. ([issue #131]( cloudpipe/cloudpickle#131)). - Fixed a crash in Python 2 when serializing non-hashable instancemethods of built-in types. ([issue #144](cloudpipe/cloudpickle#144)) 0.4.2 ===== - Restored compatibility with pickles from 0.4.0. - Handle the `func.__qualname__` attribute. 0.4.1 ===== - Fixed a crash when pickling dynamic classes whose `__dict__` attribute was defined as a [`property`](https://docs.python.org/3/library/functions.html#property). Most notably, this affected dynamic [namedtuples](https://docs.python.org/2/library/collections.html#namedtuple-factory-function-for-tuples-with-named-fields) in Python 2. (cloudpipe/cloudpickle#113) - Cloudpickle now preserves the `__module__` attribute of functions (cloudpipe/cloudpickle#118). - Fixed a crash when pickling modules that don't have a `__package__` attribute (cloudpipe/cloudpickle#116). 0.4.0 ===== * Fix functions with empty cells * Allow pickling Logger objects * Fix crash when pickling dynamic class cycles * Ignore "None" mdoules added to sys.modules * Support WeakSets and ABCMeta instances * Remove non-standard `__transient__` support * Catch exception from `pickle.whichmodule()` 0.3.1 ===== * Fix version information and ship a changelog 0.3.0 ===== * Import submodules accessed by pickled functions * Support recursive functions inside closures * Fix `ResourceWarnings` and `DeprecationWarnings` * Assume modules with `__file__` attribute are not dynamic 0.2.2 ===== * Support Python 3.6 * Support Tornado Coroutines * Support builtin methods
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As part of work on pytest-dask (https://github.com/mariusvniekerk/pytest-dask), I've found the following corner case.
When trying to serialize some of the dynamically generated modules that pytest generates, errors like these are encountered.
After applying this change the resulting serialized objects work correctly